Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0816 ATGGAGCACATAGATAGAGAAAAGAACATCGATAAGCAACAATCTCAAGATCGAAGATCGAACGAGATGCAGCAAGATGGTGGCCGACAATGGGTTCAACCTCAAAAGCCACAAGCATCCCAACAATGTCCTCATTGTGAGTCTTTAGACACTAGGTTTTGCTACTACAACAATTACAAGTCGACACAACCTCGCTACTTTTGCAAAAAATGTAAAAGGTATTGGACTCAAGGTGGGACGTTAAGGAACGTGCCCATTACTCGTCGTATTTTTAAAGGAAAACGTACAAAAAGTCCATCAACTTCTCAGTTGCACCAACCATTGTCCTCATCATCACTACAAGAGGTGGTTGTCCAAACACAACATCTACAACCACAAGAGACAGTTGTCCGAACCCAACTACCAAATTTTAAAACATTCATGATGGTTAGGAACCTATCTCACATGGTGGCTCCTCCCACAAGTCACTTTTATCAAGGTGGCCATGAGAATTTGTCTTCCATAGGGACAATCCATTCAATGACACCATCACAACCATCCACTTTTGACCAGTCTTTAGGAGTGGGAGTTAGTGTTGATGGTTCTTCTTCCAATTTGGGTCATGCATTTGATTTTACTTCCAATTCCCTTGTATGTCAAGGTGGCAATGAGTATTTGTCTTCTATGGAGGCAACTCATGCAATTAGACCATCACAACCACACACTTTTGACCAATCTCATGGAATTGGAGTTGGTGTTGTTGATTCCTCTTCCAAATTGGGCCATGCATTTGATTTCACTTCCAATTTTCTTATTTCTCAACATCCATTCCAACCAACACAATTCTATCAAATGGGCAACAAAGAAAGTGATGTAAATTCTTTGGATACCCCACAAGATTTATTTATCCCATCAAGCATTGCTCATCACAATATCAATGATGCTTCTCACAATGATTGCCCTCAAAACTTCATCAATAATAGTACTCCTGATGCCCTTTTCTCAAGTACCATCAACAATAGCACCACTTCCATTAGTGGTAACAATGAGAGGAACAATCCTTATACCCCAAGTCAATGGTATGAATTTTCAGGGTACGACACTCTCCCATGA 1092 0.4048 MEHIDREKNIDKQQSQDRRSNEMQQDGGRQWVQPQKPQASQQCPHCESLDTRFCYYNNYKSTQPRYFCKKCKRYWTQGGTLRNVPITRRIFKGKRTKSPSTSQLHQPLSSSSLQEVVVQTQHLQPQETVVRTQLPNFKTFMMVRNLSHMVAPPTSHFYQGGHENLSSIGTIHSMTPSQPSTFDQSLGVGVSVDGSSSNLGHAFDFTSNSLVCQGGNEYLSSMEATHAIRPSQPHTFDQSHGIGVGVVDSSSKLGHAFDFTSNFLISQHPFQPTQFYQMGNKESDVNSLDTPQDLFIPSSIAHHNINDASHNDCPQNFINNSTPDALFSSTINNSTTSISGNNERNNPYTPSQWYEFSGYDTLP* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0816 363 MobiDBLite consensus disorder prediction 1 24 - -
Lan18g0816 363 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 212 360 IPR045174 GO:0003700|GO:0006355
Lan18g0816 363 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 11 208 IPR045174 GO:0003700|GO:0006355
Lan18g0816 363 ProSitePatterns Zinc finger Dof-type signature. 43 79 IPR003851 GO:0003677|GO:0006355
Lan18g0816 363 ProSiteProfiles Zinc finger Dof-type profile. 41 95 IPR003851 GO:0003677|GO:0006355
Lan18g0816 363 MobiDBLite consensus disorder prediction 1 42 - -
Lan18g0816 363 PANTHER DOF ZINC FINGER PROTEIN DOF5.4-LIKE ISOFORM X1 11 208 - -
Lan18g0816 363 PANTHER DOF ZINC FINGER PROTEIN DOF5.4-LIKE ISOFORM X1 212 360 - -
Lan18g0816 363 Pfam Dof domain, zinc finger 40 90 IPR003851 GO:0003677|GO:0006355
Lan18g0816 363 MobiDBLite consensus disorder prediction 25 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0816 Lan-Chr18 13567729 13568820 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0816 32 104 C2C2-Dof Transcription Factor Family AT5G60200 54.795 2.07e-25 101
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lan18g0816 zf-Dof 2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0816 - - lang:109332569 724.546