Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan18g0699 ATGGAAGAAATGTACGGAGTGCCGTCGTCTACGACGGCGAATTACGCTGAGAAGCACTTGATTACGCCGGAGAATCTGATCTTCCCGCCGGACTACCACAGCTTCCTCATGTCTTCATCCTCCTCCGTCCGAATTCCCATGTTCGGATCCGACGACCTTCTCTCCGCCGCCGTAACCTCCTCCGCCGCAATTCAACAGCAGCAACGGGAACAAGACCAGCATGAAGTCCACATCTCAACGGTGATGAAAGCGAAAATCGCTTCTCATCCTCACTACCCTCGCCTCCTCCAAGCTTACATTGATTGCCAGAAGGTAGGAGCACCTCCTGAAATAGCAGTGTTGTTAGAAGAAATCCGGCAAGAAAACAACCTATGTTGTAAGAAAGACCTTGTTTCCACGTGTTTTGGATCCGATCCCGAACTTGACCATTTCATGGAAAACTACTGTAACATGCTGGTGAAGTATAAATCAGACTTGGCTCGCCCTTTTGATGAAGCAACTAGCTTCCTTAACAATATGGAAATGCAACTTAGTCATCTCTGTACTGGTGGTGCTAATTCAGTTCCAACACTTAACTCTGATGATGGGTGTGTATCTTCAGACGAAGATTTTAGTATCGTAGAGGGTGATGTTCAAGATGGTCAACTAGGGAGTGAAGATCGTGAACTAAAGAATAGGCTTTTACGTAAATTTGGGAGTCATATTGGCACTTTGAAATTGGAGTTTTCTAAAAAGAAAAAGAAGGGCAAACTACCAAAGGAAGCAAAACAAACATTGCTTCAATGGTGGAATCTTCACTACAAATGGCCTTACCCAACGGAAACTGATAAGATTGAACTGGCTAAGACAACGGGGCTAGACCAGAAGCAAATAAATAATTGGTTTATTAATCAAAGAAAACGTCATTGGAAACCATCTGAAAATATGCAGTTTTCTATGATGGAAACTATATGA 954 0.435 MEEMYGVPSSTTANYAEKHLITPENLIFPPDYHSFLMSSSSSVRIPMFGSDDLLSAAVTSSAAIQQQQREQDQHEVHISTVMKAKIASHPHYPRLLQAYIDCQKVGAPPEIAVLLEEIRQENNLCCKKDLVSTCFGSDPELDHFMENYCNMLVKYKSDLARPFDEATSFLNNMEMQLSHLCTGGANSVPTLNSDDGCVSSDEDFSIVEGDVQDGQLGSEDRELKNRLLRKFGSHIGTLKLEFSKKKKKGKLPKEAKQTLLQWWNLHYKWPYPTETDKIELAKTTGLDQKQINNWFINQRKRHWKPSENMQFSMMETI* 318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan18g0699 317 ProSiteProfiles ELK domain profile. 222 242 IPR005539 GO:0003677
Lan18g0699 317 SMART KNOX1_2 80 124 IPR005540 GO:0003677|GO:0005634
Lan18g0699 317 Pfam KNOX1 domain 82 122 IPR005540 GO:0003677|GO:0005634
Lan18g0699 317 Pfam Homeobox KN domain 262 301 IPR008422 GO:0003677|GO:0006355
Lan18g0699 317 PANTHER HOMEOBOX PROTEIN KNOTTED-1-LIKE 6 1 317 - -
Lan18g0699 317 SMART ELK_2 222 243 IPR005539 GO:0003677
Lan18g0699 317 Pfam KNOX2 domain 135 181 IPR005541 GO:0003677|GO:0005634
Lan18g0699 317 Pfam ELK domain 222 243 IPR005539 GO:0003677
Lan18g0699 317 ProSiteProfiles 'Homeobox' domain profile. 242 305 IPR001356 GO:0003677
Lan18g0699 317 Gene3D - 241 314 - -
Lan18g0699 317 SMART KNOX2_2 131 182 IPR005541 GO:0003677|GO:0005634
Lan18g0699 317 SMART HOX_1 244 309 IPR001356 GO:0003677
Lan18g0699 317 ProSitePatterns 'Homeobox' domain signature. 280 303 IPR017970 GO:0000981|GO:0006355
Lan18g0699 317 CDD homeodomain 254 306 IPR001356 GO:0003677
Lan18g0699 317 SUPERFAMILY Homeodomain-like 243 313 IPR009057 -
Lan18g0699 317 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 1 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan18g0699 Lan-Chr18 12247006 12254017 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan18g0699 1 315 Homeobox Transcription Factor Family AT1G23380 61.846 1.33e-131 376
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Lan18g0699 KNOX2 3.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan18g0699 - - gmx:100794719 454.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan18g0699 18 12247006 12254017 Lan6g0573 6 5023994 5035773 LSH
Lan18g0699 18 12247006 12254017 Lan1g0788 1 18527329 18535494 LSH