Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0728 ATGGGTCATCAAGGCTCGACAACAGAGACGATGACACAAGAAGGTTTACCTGTTACCATTTCATCCGGTGATGGAGCTGTTCCAAAGAAGAAATTGTCGAATTTATTGCCTCTTTTTGTGGCCCTTGTTGTGATTGCAGAGATCACGTTTCTGGGTAAGCTTGATATGGCGAAGAACGCAGCCATGGTTGACACCATCGCTGACCTGTTCTCCGGGCGGATGCTGGTCGAAGGTGTTGGTAGTGGTGGTGGTAATGGTGATGATGATTCGCGGTTATATGCGATGAGCATTGTTCAGAATCTGGAATATGAGAGCTGTGAGGAATGGTTGGAGAGAGAGGATGGTGTTACATATTCAAGGGATTTTAAAAAGGAGCCTGTTTTTGTTTCTGGAGCTACAGAGGAGTTGAATTCGTGTTCAGTGGGATGTAAATTTGAGTTTAATGGGGCTAAAAAACCTGATGCTGCATTTGGAACACCTCACCAAGCTGGAACAGCAAGTGTTCATAGATCAATGGAATCAGCTGAGTACTATCACGTGAACAATATTGCCATGGCACGACGGAGAGGGTGTAACATTGTAATGACAACCAGTCTGTCATCCGATGTTCCTGTTGGATATTTTTCGTGGGCTGAGTATGACATCATGGCACCGGTAAAGCCAAAAACTGAAGCTGCTTTTGCAGCTGCGTTCATTTCCAACTGTGGTGCTAGAAATTTCCGGTTGCAAGCTCTCGAAACCCTTGAAAAAGAAAACATCAAGATTGATTCTTATGGTGGTTGTCATAGGAACAAAGATGGAAGAGTGAACAAAGTGGAAACTCTGATGCGCTATAAGTTTAGCTTAGCATTTGAAAATTCTAATGAGGAGGATTATGTAACTGAAAAGTACTTCCAATCCCTAGTTGCTGGAACTGTCCCTGTCGTTGTTGGTGCTCCAAATATTGAGGATTTTGCTCCTTCTCCTGGTTCAGTTTTACATATTAAAGATATAGAAGATGTTGAGTCCATTGCCAAAACCATGAAACATCTTGCAGAAAATCCTGAAGCATATAATCAATCATTGAGGTGGAAGTATGAAGGCCCATCTGATTCCTTCAAGGCCCTGGTCGATATGGCTGCTGTCCATTCATCTTGCCGCCTTTGCATTCATGTGGCCACAACGATTAGAGAGAATGAAGAAAAGAGCCCAGGCTTTAAGAAACGCCCATGCAAGTGCACTAGCGGGTCAGAAACTGTATATCATATCTATGTCAGAGAAAGGGGAAGGTTTGAAATGGAATCCATTTACTTGAGGTCTAGCAATTTAACACTGGAGGCGTTGAAGTCTGCCATTGCTTTGAAGTTCAAGTCCCGGAATCATGTACCTATATGGAAGCTAGAAAGACCTGAAATTCTTAGGGGAGGCAATGACTTAAAAATTTACAGAATATACCCTCTTGGCTTGACACAGAGACAAGCCCTTTATTCCTTCAGCTTCCAAGGGGGTGTGGATTTCAGGAGTCACTTAGACAGCAATCCCTGTGCAAAGTTTGAAGTCATTTTTGTGTAG 1551 0.4313 MGHQGSTTETMTQEGLPVTISSGDGAVPKKKLSNLLPLFVALVVIAEITFLGKLDMAKNAAMVDTIADLFSGRMLVEGVGSGGGNGDDDSRLYAMSIVQNLEYESCEEWLEREDGVTYSRDFKKEPVFVSGATEELNSCSVGCKFEFNGAKKPDAAFGTPHQAGTASVHRSMESAEYYHVNNIAMARRRGCNIVMTTSLSSDVPVGYFSWAEYDIMAPVKPKTEAAFAAAFISNCGARNFRLQALETLEKENIKIDSYGGCHRNKDGRVNKVETLMRYKFSLAFENSNEEDYVTEKYFQSLVAGTVPVVVGAPNIEDFAPSPGSVLHIKDIEDVESIAKTMKHLAENPEAYNQSLRWKYEGPSDSFKALVDMAAVHSSCRLCIHVATTIRENEEKSPGFKKRPCKCTSGSETVYHIYVRERGRFEMESIYLRSSNLTLEALKSAIALKFKSRNHVPIWKLERPEILRGGNDLKIYRIYPLGLTQRQALYSFSFQGGVDFRSHLDSNPCAKFEVIFV* 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0728 516 Pfam Glycosyltransferase family 10 (fucosyltransferase) C-term 227 390 IPR001503 GO:0006486|GO:0008417|GO:0016020
Lan17g0728 516 PANTHER ALPHA- 1,3 -FUCOSYLTRANSFERASE 31 493 IPR001503 GO:0006486|GO:0008417|GO:0016020
Lan17g0728 516 Gene3D - 166 365 IPR038577 -
Lan17g0728 516 PANTHER FUCOSYLTRANSFERASE-LIKE PROTEIN-RELATED 31 493 - -
Lan17g0728 516 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 134 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0728 Lan-Chr17 6721855 6728904 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0728 11 516 Xyloglucan Fucosyltransferase1 AT3G19280 64.844 0.0 682
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0728 K00753 - gmx:100776065 785.793
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan6g0807 6 7443591 7452013 Lan17g0728 17 6721855 6728904 LSH
Lan18g0475 18 9124783 9131322 Lan17g0728 17 6721855 6728904 LSH