Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0557 ATGATGATGTCACAACATGAAAGACCTCCAAAAGCAGCAGCAACAACCAAAGACCACCATGAGAATAATAATCAACAAGGTTCTAATTCTGGTAGCAAGAAAAGTGGCACCAACACAACAAGGCCACAAGAACATAGCTTAAAGTGTCCACGATGTGACTCACCGAACACCAAGTTCTGCTACTACAACAACTACAGCCTTACACAGCCAAGGCACTTCTGCAAAACATGTAGAAGATATTGGACAAAAGGTGGCGCTTTGCGTAACGTTCCTATAGGTGGAGGGTGCAGGAAGAACAAAAAAGTTAAGTCTTCAAGGCACTCATGTGATTCCAAAGACTCTGGTGGTGGTACTTCCTCTTTAGAACATCACCATCACATTGGTGGTGGCCTCAAGTTCCTTCATTCTCTTTCATCACCTCCTATTCATGATTTTCAACTTGGTGGTTTAACTTTACCATTCCTTCATAACCCTCCAATTCCAACCACTAATTCCATATACAACAACCAGTTTTCTTCTTTTGGAGATGGTTCTGTCACAAACGCTCCAAGTTTTAATCTCGACCCTTCTTCTGGTACCACCACCCCAAGTTCTTCAAAATTGCTTGGTCTAAATTACCCATTTAGTGGAGCTAATGCAATACAGGGTATGAGTTCAATGAACCTTCAGAACCCCAACCTTGCTTCCTCCATTGAGTCTTTGAGTTCTATAAACCAGGACTTGCACTGGAAGCTTCAGCAGCAAAGGTTGTCTATGCTATTTGGTGGCGATAACCAGAAAGATGGTAGTAACCTTGAGATTAGCCATACCCAGAGGCCTCAACCCATTTTGTTTCAGAACCTTGAGAATTCAAATCCAGAAACTTTCCCTATTGGGGGTTCAAGAAACGAAGGCCCAAGTGGCGGTGGTGGTGATATACCAACTGAGTGGTTCTTTGGAAATTCTTATGCATCAGTGACAACAAAAACTTCTACACCAACTACTAGTGGTGGTGGACATGGCCATGGCAACGATAATGGTAACAACTGGAATGACAATGTTCATGCTTGGGGCGATGTCAATGTGCAGCAGCAATATAATTCTTTGCCCTAG 1092 0.4295 MMMSQHERPPKAAATTKDHHENNNQQGSNSGSKKSGTNTTRPQEHSLKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKKVKSSRHSCDSKDSGGGTSSLEHHHHIGGGLKFLHSLSSPPIHDFQLGGLTLPFLHNPPIPTTNSIYNNQFSSFGDGSVTNAPSFNLDPSSGTTTPSSSKLLGLNYPFSGANAIQGMSSMNLQNPNLASSIESLSSINQDLHWKLQQQRLSMLFGGDNQKDGSNLEISHTQRPQPILFQNLENSNPETFPIGGSRNEGPSGGGGDIPTEWFFGNSYASVTTKTSTPTTSGGGHGHGNDNGNNWNDNVHAWGDVNVQQQYNSLP* 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0557 363 ProSiteProfiles Zinc finger Dof-type profile. 47 101 IPR003851 GO:0003677|GO:0006355
Lan17g0557 363 MobiDBLite consensus disorder prediction 321 348 - -
Lan17g0557 363 Pfam Dof domain, zinc finger 45 101 IPR003851 GO:0003677|GO:0006355
Lan17g0557 363 MobiDBLite consensus disorder prediction 95 122 - -
Lan17g0557 363 MobiDBLite consensus disorder prediction 1 48 - -
Lan17g0557 363 MobiDBLite consensus disorder prediction 19 45 - -
Lan17g0557 363 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN-RELATED 26 363 - -
Lan17g0557 363 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 26 363 IPR045174 GO:0003700|GO:0006355
Lan17g0557 363 ProSitePatterns Zinc finger Dof-type signature. 49 85 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0557 Lan-Chr17 4553727 4555349 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0557 3 363 C2C2-Dof Transcription Factor Family AT5G65590 37.950 9.01e-66 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lan17g0557 zf-Dof 1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0557 - - gmx:100780729 382.489
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0557 17 4553727 4555349 Lan18g0741 18 12771160 12772769 LSH
Lan17g0557 17 4553727 4555349 Lan6g0529 6 4597868 4599591 LSH