Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan17g0293 ATGATCCCAGAACTGTTACATGGTGCTAGTTTCATTGCAGAAGAAAGGAAAATCTCCATTAACGGAGGAGGAGGAGGAGGAGGAGTTGTGCTTCCATCCACAGTACCATCTTCTACTTTTCATTCTTCTTCACAGTCTCATTCTGATTCCACAACCAATGTTACTGCCACCACTAATGTTGGCTCCTCAGAGAATCAAAATTTGAGGTGCCCACGATGTGATTCACCAAACACAAAGTTCTGTTATTACAACAACTACAACCTAACTCAGCCTCGCCACTTCTGCAAGACATGTCGCCGCTACTGGACCAAAGGAGGTGCTCTGAGGAATGTTCCGATCGGAGGTGGCTGCAGGAAAAGCAAGAACGTGGTTGTGTCGAATTCGGCGTCGAAGGCTGCCACCACAAAGATGAAAACAGTGGCATCAGAGCTTGGAAGGTCAGGGGTTGGTCCTGCAGGGTTTGTTCACGAGTTCATGACAAGCCCAATCCAATGGGGTTCTCCACATAATACTCATATATCGGCTTTACTCAAAGCTAATACTCAAAACCAAAACCCTATCCCTAACCCTAGTTCCGTGTCCTTTAATGATGATGGGGTCAAAGAAGAAGGGAACTTCACGGGGTCTCAGCCCCACGTGATGGCCGAGCCATTCATTGCAAATTTGAATCCTAGAACCCTAGGGTATGATAGTGTTGGACAGGTTCCTTCAATGGGTTTTGGCAGCACATTTTGGAGAAGCAATAATCAAAATCAACCTCAACAGCATAATAGTGGCTTTGTACTTGGGGAACATCAAAACATGAGTGGAATTCAAGAACTTTACCATAAGATCAGGTCATCATCATCAGGTAATTATTGCAGTGATATGTCATCACCCATGTTTGTGGGGAACATGGCTTCTTCATCATCTTCTTTATCCTACATTTTGGAGCCACCTTCAGTTGCTGGTAGTGAATTGGGGAGCTGGAATCCAACCTTTTCTTGGTCTGATCTTCCCACAAGCAATGGTGCATATCCTTAA 1023 0.4497 MIPELLHGASFIAEERKISINGGGGGGGVVLPSTVPSSTFHSSSQSHSDSTTNVTATTNVGSSENQNLRCPRCDSPNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKSKNVVVSNSASKAATTKMKTVASELGRSGVGPAGFVHEFMTSPIQWGSPHNTHISALLKANTQNQNPIPNPSSVSFNDDGVKEEGNFTGSQPHVMAEPFIANLNPRTLGYDSVGQVPSMGFGSTFWRSNNQNQPQQHNSGFVLGEHQNMSGIQELYHKIRSSSSGNYCSDMSSPMFVGNMASSSSSLSYILEPPSVAGSELGSWNPTFSWSDLPTSNGAYP* 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan17g0293 340 MobiDBLite consensus disorder prediction 33 67 - -
Lan17g0293 340 ProSitePatterns Zinc finger Dof-type signature. 70 106 IPR003851 GO:0003677|GO:0006355
Lan17g0293 340 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 32 338 IPR045174 GO:0003700|GO:0006355
Lan17g0293 340 ProSiteProfiles Zinc finger Dof-type profile. 68 122 IPR003851 GO:0003677|GO:0006355
Lan17g0293 340 Pfam Dof domain, zinc finger 66 122 IPR003851 GO:0003677|GO:0006355
Lan17g0293 340 PANTHER F-BOX FAMILY PROTEIN 32 338 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan17g0293 Lan-Chr17 2050347 2051952 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan17g0293 64 182 C2C2-Dof Transcription Factor Family AT1G51700 49.219 5.43e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lan17g0293 zf-Dof 8.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan17g0293 - - gmx:778100 360.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan17g0293 17 2050347 2051952 Lan18g1019 18 15239373 15241124 LSH
Lan17g0293 17 2050347 2051952 Lan6g0134 6 955031 960301 LSH