Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g1239 ATGGAAGGGTTAGATACAAATTCATGCACAAAGCAAGTTGAGAAGAAGGTAAAACCACAAGAACAATTGAATTGTCCAAGGTGCAATTCAACAAACACAAAGTTTTGTTACTACAACAACTATAGCCTCACACAACCAAGATATTTTTGCAAGACTTGTAGAAGGTATTGGACTTCAGGTGGTTCTATAAGAAATGTTCCAGTTGGAGGTAGTTCGAGGAAGAACAAAAAAGTTATAACATCGTCATTATCGTCATCATCACCATCATCATCGAAGGTTCCTGATTTTAACTATAATTCTTTTCGAAACCCTAAAATAATGGAAGGAGGACATGATCTTAGTTTGGCTTTTCCAACCATGAAGAATTATCATCATGAAATGTCCTCATATGTTGGAATGCATAAACTTGAAGTTGGTAATACTAGTTATCATGGCATGGCTTCTAGGGTTTTGAATAATCCTTATGTTTCTAATTTCCTTTACCCAAGTAATGGTTTTTCTATGCAAGAAATTAAACCAAACCTTGGTTTTTCAATTGATGGGGTCCAAGATAATAGTGGGAAGATTTTGTTCCCTTTTGGAGACATGAATCAGCATTCAAATTCAGGTGTTCAAGTAGTGGAACACAATAAAGAACAAGGAAATAATTCAAGTAGTGGATATTGGATTGAAATGAATGGTGAAGGGTCATCATGGTAA 699 0.3505 MEGLDTNSCTKQVEKKVKPQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTSGGSIRNVPVGGSSRKNKKVITSSLSSSSPSSSKVPDFNYNSFRNPKIMEGGHDLSLAFPTMKNYHHEMSSYVGMHKLEVGNTSYHGMASRVLNNPYVSNFLYPSNGFSMQEIKPNLGFSIDGVQDNSGKILFPFGDMNQHSNSGVQVVEHNKEQGNNSSSGYWIEMNGEGSSW* 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g1239 232 Pfam Dof domain, zinc finger 21 77 IPR003851 GO:0003677|GO:0006355
Lan16g1239 232 PANTHER DOF ZINC FINGER PROTEIN DOF1.8 9 225 - -
Lan16g1239 232 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 9 225 IPR045174 GO:0003700|GO:0006355
Lan16g1239 232 ProSiteProfiles Zinc finger Dof-type profile. 23 77 IPR003851 GO:0003677|GO:0006355
Lan16g1239 232 ProSitePatterns Zinc finger Dof-type signature. 25 61 IPR003851 GO:0003677|GO:0006355
Lan16g1239 232 MobiDBLite consensus disorder prediction 67 94 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g1239 Lan-Chr16 20432718 20433696 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g1239 15 232 C2C2-Dof Transcription Factor Family AT3G61850 44.074 3.08e-52 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lan16g1239 zf-Dof 7.8e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g1239 - - pvu:PHAVU_006G114900g 257.684