Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan16g0150 ATGGATCCAGTTATAAGAGGTGGAATAGAAAAAGATATGAATGAGCAACAATCTCTTGATCAAAGAGGAAATGAGATGCAACAAGGTGGTGATAAGAAACAGACCAAGATTCAACAACCTCAACGTCCACAACAACCTCAACAATGTCCACGTTGTAATTCTATGAACACCAAGTTCTGCTATTACAACAACTACAATGTGGCACAACCTCGTCACTATTGCAAAACTTGCAGAAGGTATTGGACCCAAGGTGGAACCTTGAGGAACATACCTATTGGTGGTGGCTGTAGAAAGAAGAAGCATGTTGATAATTCTTCATCTTCTCGATCTGAACAGTTTCAACAACCACGGCTACAAGACATGGTTGTTCAAACCCAACAACCAAACATGACAACAATGGGGATGAAGGTTACAAACCCTTGTCTTGGAATGTCTCCTTCCACCAACCCCTTTTATCAAGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGTGGATACTTGTCTTCTCTTCACTCGATTCATTCAATGAATCAATCACGATCAAGATGTTATGATCAGTCTTCTTTCAAAATTGGAAATGATGTAGCTGGTTCTTCTTCCAATTTGGATCTAGCATCATCATGTTTCAATATTGGTTCTCTTTCTAACCAATACCAAATTCGACCCTCCAATTTCTACCAAATGGGTGGCAAAGAAAGAGAGCTACAATCTCAATATACACCACAACAAGGTTTAATGATGCCATCAAGTATGAATAGTATTCATACTAGTGTTCCTGCTCAAACTGATTGGACTAATAGCTTCATTAATAATGCTAATAATAGAACTTGTGATGCATCTTTATGGGGTACTATTAGCAATAACACTGCTTCCATTTGTGGTAACATTGAGAGTGGTGCTAATAATGTTGCTTCTTCTCCTTTAACCCTAAATCAGTGGTCTGATTTTGCAGGGTTTGGCCCTTCCCCCTCATCTTATTGA 981 0.3976 MDPVIRGGIEKDMNEQQSLDQRGNEMQQGGDKKQTKIQQPQRPQQPQQCPRCNSMNTKFCYYNNYNVAQPRHYCKTCRRYWTQGGTLRNIPIGGGCRKKKHVDNSSSSRSEQFQQPRLQDMVVQTQQPNMTTMGMKVTNPCLGMSPSTNPFYQGGGGGGGGGGGGYLSSLHSIHSMNQSRSRCYDQSSFKIGNDVAGSSSNLDLASSCFNIGSLSNQYQIRPSNFYQMGGKERELQSQYTPQQGLMMPSSMNSIHTSVPAQTDWTNSFINNANNRTCDASLWGTISNNTASICGNIESGANNVASSPLTLNQWSDFAGFGPSPSSY* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan16g0150 326 MobiDBLite consensus disorder prediction 94 116 - -
Lan16g0150 326 ProSiteProfiles Zinc finger Dof-type profile. 47 101 IPR003851 GO:0003677|GO:0006355
Lan16g0150 326 MobiDBLite consensus disorder prediction 19 50 - -
Lan16g0150 326 PANTHER DOF ZINC FINGER PROTEIN DOF5.4-LIKE ISOFORM X1 15 322 - -
Lan16g0150 326 ProSitePatterns Zinc finger Dof-type signature. 49 85 IPR003851 GO:0003677|GO:0006355
Lan16g0150 326 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 15 322 IPR045174 GO:0003700|GO:0006355
Lan16g0150 326 MobiDBLite consensus disorder prediction 1 18 - -
Lan16g0150 326 MobiDBLite consensus disorder prediction 1 50 - -
Lan16g0150 326 Pfam Dof domain, zinc finger 45 101 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan16g0150 Lan-Chr16 1179220 1180200 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan16g0150 35 123 C2C2-Dof Transcription Factor Family AT5G60200 55.056 8.47e-32 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lan16g0150 zf-Dof 2.1e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan16g0150 - - lang:109329186 628.632
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan16g0150 16 1179220 1180200 Lan16g0150 16 1179220 1180200 ECH
Lan19g0386 19 4862678 4863973 Lan16g0150 16 1179220 1180200 LSH
Lan6g0731 6 6640774 6642559 Lan16g0150 16 1179220 1180200 PCT
Lan16g0150 16 1179220 1180200 Lan6g0731 6 6640774 6642559 PCT