Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g1194 ATGTCAAATTCTATTACCCATCAAAACCAATTTGAAAACCAAGAGCTTAATGCTTATGGCTCTTCTTTAAGAAACAACAGTGCATATTCTGAGACCTTAGGAGTATTTCAAAGAGACAGAATGTCACAAGCTGAGAGGTCAGAAATGAGCCACACAAAGCATTTGATGAATCTTCTTGGAACAGCTAATGAGAGGAGTAACCAAACTCAAGGCTTAGCTCTTTCTTTAGGCTCTCACATGCTTGACCCTTCTGATGAATACAGACATAGACCCTTAAATCAGGGTCTCATGAACTCAAGATACCTCAAACCAGCACAATCCCTTCTTGAAGATATTGTTGGTGTTGGTGCAAATGTGATTGATAGAATGAATGAAAAGCATGTGGTGAAGTTGTTTCATGGGAGTAGAAAAGGTGCAAGAACACTTTCTTCAGAGCTAAAAGCAGAGTTGAGGAATATTGGACCTTTATTATTATTAGCTGAAAAACAAGAACATCAAATGAAAATTGCAAAGTTGATTGCTTTATTGGATGAGATAGAAAGCAGATATGAGAAATACTTCCATCAAATGCAGGAAGTAGAATCATCTTTTGAAATGATAGCAGGTTTAGGAGCTGCTAAGTGTTACACTGTTTTAGCACTTCAAGCCATGTCAAGGCATTTTTGCAGCTTAAGAGATGCTATAGTGTCACAAATAAATGTGGAAAAGAGAAAACTTTCTCAAGATTTACATAAAATAAATAGTGGGTTATCTCAGCTAAGCCTATTTGATAGAGACAATAGACATAGTAGAATGTCACTTCAACAACTTGGAATTATTCAAAACCAACGCCAAATATGGAGACCTATTAGAGGGTTGCCTGAAACATCAGTAGCAATTCTTCGTTCTTGGCTTTTTGAGCATTTTCTCCACCCTTATCCCAATGATTCTGAAAAGTTAATGCTGACATCTCAGACAGGTTTAACTAAAAACCAAGTATCAAATTGGTTCATAAATGCTAGGGTAAGATTATGGAAACCAATGATAGAAGAAATGTACAAAGAAGAGTTTGGAGAGTCTTCAGAAGATTCCAACCCGCCAGTTAACAACTATTTAACAAGAGAAGATATCATAGACTATGTGGAGAATTGA 1131 0.3634 MSNSITHQNQFENQELNAYGSSLRNNSAYSETLGVFQRDRMSQAERSEMSHTKHLMNLLGTANERSNQTQGLALSLGSHMLDPSDEYRHRPLNQGLMNSRYLKPAQSLLEDIVGVGANVIDRMNEKHVVKLFHGSRKGARTLSSELKAELRNIGPLLLLAEKQEHQMKIAKLIALLDEIESRYEKYFHQMQEVESSFEMIAGLGAAKCYTVLALQAMSRHFCSLRDAIVSQINVEKRKLSQDLHKINSGLSQLSLFDRDNRHSRMSLQQLGIIQNQRQIWRPIRGLPETSVAILRSWLFEHFLHPYPNDSEKLMLTSQTGLTKNQVSNWFINARVRLWKPMIEEMYKEEFGESSEDSNPPVNNYLTREDIIDYVEN* 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g1194 376 Coils Coil 162 196 - -
Lan15g1194 376 SMART prehox3 90 230 IPR006563 -
Lan15g1194 376 Pfam Homeobox KN domain 297 336 IPR008422 GO:0003677|GO:0006355
Lan15g1194 376 ProSiteProfiles 'Homeobox' domain profile. 299 340 IPR001356 GO:0003677
Lan15g1194 376 SUPERFAMILY Homeodomain-like 286 347 IPR009057 -
Lan15g1194 376 CDD homeodomain 280 341 IPR001356 GO:0003677
Lan15g1194 376 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 8 95 - -
Lan15g1194 376 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 96 358 - -
Lan15g1194 376 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 11 96 358 - -
Lan15g1194 376 PANTHER BEL1-LIKE HOMEODOMAIN PROTEIN 11 8 95 - -
Lan15g1194 376 Gene3D - 274 355 - -
Lan15g1194 376 Pfam Associated with HOX 96 229 IPR006563 -
Lan15g1194 376 SMART HOX_1 280 344 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g1194 Lan-Chr15 20448691 20451139 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lan15g1194 POX 6.9e-40 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g1194 15 20448691 20451139 Lan14g0934 14 15770526 15773139 LSH
Lan15g1194 15 20448691 20451139 Lan3g1255 3 24648158 24650341 LSH
Lan15g1194 15 20448691 20451139 Lan5g0439 5 9564204 9569496 PCT