Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g1168 ATGAGTCACCATCCTAATAAACAATTTTCTCATTCACCGTTATCACACAGTGACGGTAGTTTACGACAAACACTTCAACAACGTAGGCTTACAAGGCAGAGAAGGCTCCGTTACTTGACGGACCAAGACGCCGGCATCCATTCCACGTCATCTTTACCGGCTTCTCCTATTCGTTCTTTTAACTCCGGTGGTTCTTGTTCCGATCACTGGTCCTCTTCTGCTATCCCACAACCGTTGCCTCTTCCTGAAACACCGTTGACTCATCGACCGGAATCAACCGTTCACAATTCTGGATATTATGCTAATATCGGATCTCCTTCCTTTGAAAATCAGGCCTTTGCTTTTTCCAGAAAATCGGTGGGTTATGATTCAGTGAAGGACTTCAGATCTTCAAGCGTTTTGGGTAGATCCTCTTTTGATGCAATAACTGCAAATGCAAATTATGACTTGAAAGTCAATATTCCAGCTACAAGAGTCTTGGCAGGCAACAGTTCATGTAAAGATCCCAGAGAACTCTCTCATCAAAGTATTTACAACATGAAATTGAATTTTTCTGCCAAGAGTGCCCCAACTAGCATACTCTCTAGTCCCGTTACTAGTCCTCGTAGGGCAAGCAATGTAGATTTATTTGATCCTTCCGTTGATTTTCATCAAGATTTTAATGATATTTTGAAAGTGTCACTGGCTAAAACTGTTCGTAGTCCAGATAATTCCCCTCTCCGTAGCCCGCAGAGCCATAGTCCTTACCTCAATACTAACAATCAAGATGGGTCTAAGCAACCTAAATATTGCTCCCGAGTGTGGCCTGAAAATAACCATGTCGATGCACACCCATTGCCCCTTCCTCCTAAAGCTTCATCCCCGGCACAAACATGTACACAGCATCAATCAAGTATCATGCATCATAGTACAGAAAATTCACCGTCAATGAAAGGTCAATGGCAGAAGGGAAAACTTATCGGACGTGGATCATTTGGAAGTGTTTATCATGGAACCAACCTAGAGACTGGAGCCTCATGTGCTATGAAAGAGGTGGATTTGATTCGTGATGATCCTAAATCTGCTGACTGCATAAAGCAATTAGAGCAGGAAGTCAGAATTCTTCGTCAACTAGACCACCCTAACATTGTGCAGTATTATGGCAGTGAAATAGTTGGGGATCACTTGTACATTTACATGGAGTACGTACATCCTGGATCAATTAATAAATTTATGCATGATCATTGTGGAGCTATGACGGAATCTGTGGTTCGCAATTTTACACGCCATATTCTTAATGGACTGGAATACTTACATAGTATGAAGACTATCCATAGGGATATCAAAGGTCCAAACTTGCTGGTTGATGCATCAGGCACTGTCAAGCTAGCAGATTTTGGCGTGGCAAAAATTCTGACGGAGAAATCATATGAACTTTCATTGAAGGGGAGTCCGTACTGGATGGCTCCGGAGCTCATGATGGCTGCCATAAAGAAAGAATCCAGTCCGAACCTTGCAATGGCCATTGATATATGGAGCTTAGGGTGCACCGTCATTGAGATGCTGACAGGCAAACCTCCATGGAGCGAATTTCAAGGGCCTCAAGCTATGTTCAAAGTACTGCACAAATCCCCAACTATACCCCAAACTTTATCTCGAGAGGGACAAGATTTCCTCCAGCAGTGTTTCAGAAGGAATCCTGCAGAGCGACCATCAGCAGCAATGCTTCTTAAACACGCCTTTGTACAAAATTTGCATGATCAAGATGTTTTGGTTCATTCACAAGGCTATCCCAGAGCTGACCCAGGACCAGAGGTTCATTTTCGTAGTCCCGACCACAGTCCCAAAAAGGGACGTGATGTAGCGCCACTGTCAGCCTCCATTGGCGCACGGATCATTAGCAAAATTCATAATTTCATTGGTGATACTTCCAAAAAATATACTACTGAAAAAGCTAGCCATACTCATGGTTAA 1953 0.4316 MSHHPNKQFSHSPLSHSDGSLRQTLQQRRLTRQRRLRYLTDQDAGIHSTSSLPASPIRSFNSGGSCSDHWSSSAIPQPLPLPETPLTHRPESTVHNSGYYANIGSPSFENQAFAFSRKSVGYDSVKDFRSSSVLGRSSFDAITANANYDLKVNIPATRVLAGNSSCKDPRELSHQSIYNMKLNFSAKSAPTSILSSPVTSPRRASNVDLFDPSVDFHQDFNDILKVSLAKTVRSPDNSPLRSPQSHSPYLNTNNQDGSKQPKYCSRVWPENNHVDAHPLPLPPKASSPAQTCTQHQSSIMHHSTENSPSMKGQWQKGKLIGRGSFGSVYHGTNLETGASCAMKEVDLIRDDPKSADCIKQLEQEVRILRQLDHPNIVQYYGSEIVGDHLYIYMEYVHPGSINKFMHDHCGAMTESVVRNFTRHILNGLEYLHSMKTIHRDIKGPNLLVDASGTVKLADFGVAKILTEKSYELSLKGSPYWMAPELMMAAIKKESSPNLAMAIDIWSLGCTVIEMLTGKPPWSEFQGPQAMFKVLHKSPTIPQTLSREGQDFLQQCFRRNPAERPSAAMLLKHAFVQNLHDQDVLVHSQGYPRADPGPEVHFRSPDHSPKKGRDVAPLSASIGARIISKIHNFIGDTSKKYTTEKASHTHG* 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g1168 650 ProSiteProfiles Protein kinase domain profile. 314 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan15g1168 650 SUPERFAMILY Protein kinase-like (PK-like) 296 591 IPR011009 -
Lan15g1168 650 MobiDBLite consensus disorder prediction 6 21 - -
Lan15g1168 650 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 10 647 - -
Lan15g1168 650 SMART serkin_6 314 575 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan15g1168 650 MobiDBLite consensus disorder prediction 232 314 - -
Lan15g1168 650 MobiDBLite consensus disorder prediction 590 615 - -
Lan15g1168 650 MobiDBLite consensus disorder prediction 232 261 - -
Lan15g1168 650 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE YODA 10 647 - -
Lan15g1168 650 Pfam Protein kinase domain 315 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan15g1168 650 MobiDBLite consensus disorder prediction 598 612 - -
Lan15g1168 650 MobiDBLite consensus disorder prediction 1 21 - -
Lan15g1168 650 MobiDBLite consensus disorder prediction 286 313 - -
Lan15g1168 650 ProSitePatterns Protein kinases ATP-binding region signature. 320 343 IPR017441 GO:0005524
Lan15g1168 650 Gene3D Transferase(Phosphotransferase) domain 1 311 595 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g1168 Lan-Chr15 20308618 20313252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g1168 29 577 MAP Kinase Kinase Kinase AT5G66850 46.115 5.89e-150 448
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Lan15g1168 Pkinase 6.7e-68 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g1168 15 20308618 20313252 Lan3g1233 3 24494124 24498940 LSH
Lan3g1233 3 24494124 24498940 Lan15g1168 15 20308618 20313252 PCT
Lan15g1168 15 20308618 20313252 Lan3g1233 3 24494124 24498940 PCT