Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g1167 ATGGAAGCAATGAACAGAAGCTCACCCACCACTACTTCTTCCTCATATTCTTCTTCTTCAGAATCCAACCACGTTCCTAGAAACCCAACCAGGAACGAAAGAATCAAAGGCCCATGGAGTGCAGAAGAGGACCGTATCCTAACCCAACTTGTGGAACGACACGGTCCGAGAAACTGGTCTTTAATTAGCCGTTACATAAAAGGAAGGTCCGGTAAGTCATGCAGGCTACGGTGGTGCAACCAGCTGAGCCCCGCCGTTGAGCACCGTCCCTTCTCCGTCAAAGAGGACGAAACAATCATAGCCGCACATGCCCATTACGGTAACAGGTGGGCCACCATTGCACGGTTACTACCTGGTCGAACCGATAACGCAGTGAAGAACCATTGGAATTCAACGTTGAATCGAAGACCCATGGAACAACAACGTGGTTCATTTGATGCTATAACTACTACTATCGGAGAGAGGGGAATTTCTTTGTCGGGACCTGTGCTGGTGGAGGAGGACCCGTTGACCGCGTTGACTCTTGCTCCGCCGGGGATTGATAATGGTGGTGGCGTGGAGGAGGCGAGGATTTCGCCGGAAGAGGGTGTGCCGTCGGGGTTTTGGGATATGATGAGAGATGTTATTAATAGAGAAGTGAGGGAATATGTTACTTCTAATTTTTCTGATAATAATAATTCGCGTTTTCATTGA 693 0.4877 MEAMNRSSPTTTSSSYSSSSESNHVPRNPTRNERIKGPWSAEEDRILTQLVERHGPRNWSLISRYIKGRSGKSCRLRWCNQLSPAVEHRPFSVKEDETIIAAHAHYGNRWATIARLLPGRTDNAVKNHWNSTLNRRPMEQQRGSFDAITTTIGERGISLSGPVLVEEDPLTALTLAPPGIDNGGGVEEARISPEEGVPSGFWDMMRDVINREVREYVTSNFSDNNNSRFH* 231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g1167 230 Gene3D - 35 87 - -
Lan15g1167 230 SMART sant 87 135 IPR001005 -
Lan15g1167 230 SMART sant 35 84 IPR001005 -
Lan15g1167 230 ProSiteProfiles Myb-like domain profile. 31 82 IPR001005 -
Lan15g1167 230 PANTHER MYB PROTEIN-RELATED 1 213 - -
Lan15g1167 230 Pfam Myb-like DNA-binding domain 39 97 - -
Lan15g1167 230 CDD SANT 38 80 IPR001005 -
Lan15g1167 230 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 1 213 - -
Lan15g1167 230 SUPERFAMILY Homeodomain-like 34 129 IPR009057 -
Lan15g1167 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 31 86 IPR017930 -
Lan15g1167 230 MobiDBLite consensus disorder prediction 1 26 - -
Lan15g1167 230 CDD SANT 90 133 IPR001005 -
Lan15g1167 230 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Lan15g1167 230 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 88 137 IPR017930 -
Lan15g1167 230 MobiDBLite consensus disorder prediction 1 39 - -
Lan15g1167 230 Gene3D - 90 136 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g1167 Lan-Chr15 20297945 20298795 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g1167 28 200 MYB Transcription Factor Family AT4G37260 57.955 3.34e-58 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lan15g1167 Myb_DNA-binding 3.4e-16 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g1167 15 20297945 20298795 Lan3g1231 3 24482827 24483615 LSH
Lan3g1231 3 24482827 24483615 Lan15g1167 15 20297945 20298795 PCT
Lan15g1167 15 20297945 20298795 Lan3g1231 3 24482827 24483615 PCT