Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0800 ATGCCAAATCAAAAGCCCATTTCACACACCACTTTGATTCTCTTCCTTTCACAGCTTCTTCTCATCAATGTAGCTCAAGTAACCTCAAAATCCACCATAGAACCATGCACAAACTCAGACTCGTGCAATGCACTCCTAGGCTACACTCTCTACACTGATCTTAAAGTCTCTGAGGTAGCTTCCCTCTTCCAAATTGACCCAATTTCTCTCCTAACAGCCAATGCCATAGACATATCTTACCCTGATGTGGAACACCACATCCTCCCTTCAAGACTCTTCCTCAAGATCCCAATCTCTTGCTCCTGTGTTGATGGCATTCGAAAATCGGTTTCCACACATTACAAGATTCGCCCTTCGGATAGTCTTTCATTCATTGCGGATTCAGTGTATGGAGGTCTTGTATCTGATGATCAGCTCAGGGAAGCTAATTCTGTTACTGACCCTTCTGTGCTTGATGTTGGGCAGAGCCTTGTTGTGCCTCTTCCTTGTACTTGCTTCAATGGCACTGATAATTCGTTGCCCGCGATTTATTTGTCGTATGTGGTGAAACGGGTTGATAGTTTGGCTGCAATTGCAGCTAGGTATTTCACCACTCTTACTGATTTGATGAATGTTAATGCCTTGGGGAGCACTGCTATTGCTGATGGTGATATTCTTGCTATTCCAATACCAGCTTGTGCTTCAAATTTTCCAAGATATGCCTCTGATTATGGTTTGCTTGTCCCTAATGGAAGTTATGCCGTTACAGCAGGCCATTGTGTGCAGTGTAGCTGTGGACCACGTGACCTGAATTTGTATTGTATGCCAGCTTCTCTGGCTGTTTCATGCTCCAGCATGCAATGTAAAAACAGCAATCTTATGCTTGGGAATGTTACGGTGCAACAGACTGGTGGTGGTTGCAATGTTACTTCTTGCAATTATGATGGTATTGCTAACGGCACCATAATAACAACGTTGTCCCCGACTCTTCAGCCTCGATGCCCAGGACCACAAGAATTCCCTGATCTTATAGCTCCACCTACAACTGTTACGAGAGAATCAATATTTGCACCAGCACCTGCACCTCAATCACATGGAAGTGGTCTAACAACACCCAAATCCTCGGTGGTACCTTCAACAGGATCGTTTTCAGGATTCTCACCTGCAAATGGTCCTATTAGTGGGATTGCTTCCGGTGCTTCTGCAGCTTGCTCCTTCGCGAATCCATTGCCTGCCACTTTGGCATCTGCACTTTTGCTATTGTTTGCCAAGTTGATGCTCCCGGAAGCTTTGTAA 1275 0.4502 MPNQKPISHTTLILFLSQLLLINVAQVTSKSTIEPCTNSDSCNALLGYTLYTDLKVSEVASLFQIDPISLLTANAIDISYPDVEHHILPSRLFLKIPISCSCVDGIRKSVSTHYKIRPSDSLSFIADSVYGGLVSDDQLREANSVTDPSVLDVGQSLVVPLPCTCFNGTDNSLPAIYLSYVVKRVDSLAAIAARYFTTLTDLMNVNALGSTAIADGDILAIPIPACASNFPRYASDYGLLVPNGSYAVTAGHCVQCSCGPRDLNLYCMPASLAVSCSSMQCKNSNLMLGNVTVQQTGGGCNVTSCNYDGIANGTIITTLSPTLQPRCPGPQEFPDLIAPPTTVTRESIFAPAPAPQSHGSGLTTPKSSVVPSTGSFSGFSPANGPISGIASGASAACSFANPLPATLASALLLLFAKLMLPEAL* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0800 424 SMART LysM_2 179 222 IPR018392 -
Lan15g0800 424 SMART LysM_2 113 160 IPR018392 -
Lan15g0800 424 Pfam LysM domain 180 222 IPR018392 -
Lan15g0800 424 Pfam LysM domain 114 160 IPR018392 -
Lan15g0800 424 ProSiteProfiles LysM domain profile. 178 221 IPR018392 -
Lan15g0800 424 ProSiteProfiles LysM domain profile. 112 159 IPR018392 -
Lan15g0800 424 CDD LysM 112 159 IPR018392 -
Lan15g0800 424 Gene3D LysM domain 106 168 IPR036779 -
Lan15g0800 424 CDD LysM 179 221 IPR018392 -
Lan15g0800 424 Gene3D LysM domain 169 229 IPR036779 -
Lan15g0800 424 SUPERFAMILY LysM domain 178 223 IPR036779 -
Lan15g0800 424 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 24 402 - -
Lan15g0800 424 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 3 24 402 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0800 Lan-Chr15 17164417 17167730 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0800 4 399 LysM Receptor-like Protein (LYPs) Gene Family AT1G21880 68.170 0.0 557
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0800 - - gmx:100777292 644.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0800 15 17164417 17167730 Lan14g0612 14 12962919 12965782 LSH
Lan15g0800 15 17164417 17167730 Lan3g1591 3 27536655 27539698 LSH