Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan15g0725 ATGTTCCCTCAAAGACATAGTATTATTAGTGGTAGCATGCTAGAACAAATGTTACATCTTCAATCTAATCATATGCCTCTTCCAACACCAATTATTGAGAAATCAAGTTCAAGGTCATGGAAACCACACATTGAGGTAGCACCAAATTGCCCTCGTTGTGCTTCCACCAACACAAAATTCTGTTACTACAACAACTACAGCTTGTCACAGCCTAGATACTTCTGCAAAGGCTGCAGGCGCTACTGGACCAAAGGCGGCTCTCTTCGCAGCGTCCCTGTCGGGGGTGGTTGCCGCAAGAACCGTCGTGGGAAATTGGCAAGGCACTCACCCCAGGGTGGGCGACTTGCCAATGACAATTCTGGTTCTGATGACCGAGATTCATCATCAGACACCAATATTCTGTCTAATGACATAGACATGGCAGTTGTGTTCGCCAAATTCTTGAACCAAAACCCAAATTCTGGTGAGGAATTTGAGGGTGAGGCTAATAATAACGCATCGATGTGTTCGAATAAATCGCCAACAAGATCTTCGACACCAGAATTAAGCATCGAAGCTGAGATTGATGCAGTGGTGCAGCCACAGGAGAAGCCATCTAATGATCCTATAGATGCTGATTCAGGGAAAATTGGTGGGCCCCTTGAGGAATTGAGTTTTAGTGGAATTGATGAGTTTGAAGGATTCCTAGGTGAAGATGTAGTACAAGATGTTCTTTGGTCTAATGATGTTACTATGTCTTCTTCAGTTAATGATAGCTGGCAACAACCAATGATGCAAATGCAATTGCAACAGTTAGAAGAATCTTTGATGCCATTGAATGAAGATGGTGATCAAATTTTACCAATTTCTTCAACCATCAATTTGTTAAATGAAAGTTGGAGTACTTGGAGTTCCTTTGATCTTCCAACCATGGACCTTTACTCATCAACACCTTGA 936 0.4252 MFPQRHSIISGSMLEQMLHLQSNHMPLPTPIIEKSSSRSWKPHIEVAPNCPRCASTNTKFCYYNNYSLSQPRYFCKGCRRYWTKGGSLRSVPVGGGCRKNRRGKLARHSPQGGRLANDNSGSDDRDSSSDTNILSNDIDMAVVFAKFLNQNPNSGEEFEGEANNNASMCSNKSPTRSSTPELSIEAEIDAVVQPQEKPSNDPIDADSGKIGGPLEELSFSGIDEFEGFLGEDVVQDVLWSNDVTMSSSVNDSWQQPMMQMQLQQLEESLMPLNEDGDQILPISSTINLLNESWSTWSSFDLPTMDLYSSTP* 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan15g0725 311 PANTHER DOF ZINC FINGER PROTEIN DOF1.2 28 274 - -
Lan15g0725 311 Pfam Dof domain, zinc finger 48 102 IPR003851 GO:0003677|GO:0006355
Lan15g0725 311 MobiDBLite consensus disorder prediction 155 181 - -
Lan15g0725 311 MobiDBLite consensus disorder prediction 92 132 - -
Lan15g0725 311 ProSitePatterns Zinc finger Dof-type signature. 50 86 IPR003851 GO:0003677|GO:0006355
Lan15g0725 311 ProSiteProfiles Zinc finger Dof-type profile. 48 102 IPR003851 GO:0003677|GO:0006355
Lan15g0725 311 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 28 274 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan15g0725 Lan-Chr15 16121334 16122669 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan15g0725 13 238 C2C2-Dof Transcription Factor Family AT1G21340 38.865 2.12e-45 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lan15g0725 zf-Dof 3.6e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan15g0725 - - mtr:MTR_3g090430 314.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan15g0725 15 16121334 16122669 Lan14g0559 14 11806776 11807730 LSH
Lan15g0725 15 16121334 16122669 Lan3g0796 3 14844804 14846602 LSH