Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0674 ATGCATAAACCAATGCATGCGGCGTCGTTTTTAATATCACGCTTCAACTCCCTTCACTACCGTTATGTCAAGCCTCTCATACCCACGCGCCTTTTCTCTCGCTATTCCCTTGAACAGTTCTCTGATGATGACTATGATTGTGATTTTGAGACCCATCAGGCGTCGTCTACGGTGGCCAATGTAGATGAGTGGAAATGGAAGCTCAGCATGCTGCTACGTAGCGAGAAGGACCAGGAGATTGTATCTAGAGACAAAAAAGATAGGAGAGACTATGAACAGATAGCTAACCTTGCCAAAAGAATGGGACTTTACAGTGAGGTGTTTGGAAAAGTGATTGTTGCAAGTAAGGTGCCTCTTCCTAACTACCGGCCAGATTTGGATGACAAACGTCCACAAAGAGAGGTGGTGGTTCCACTAAGCTTGCAAAGGAGGGTTGAGGGTTTGTTGCAGGAATACCTTGACAGACTTCAGTTAAATTCTGAAAAGACAACTGAGAATGTGGATGATTTCAAGTCCATCAATGAGGTTAAAAATGTGGATATGGATGAAAATGCTGATTCTTATGTGGATGGTTCTGTTATGGAAAAGGTTCTCCAGAAGAAGAGTTTGAGGATGCGCAATATGCAAAGAGCTTGGCAGGAATCACCTGAGGGCAGGAAGATGCTGGAGTTCCGGAGGTCTCTTCCATCATTCAAGGAGAAGGAAGGTTTACTTCAAGCTATAGCTCGGAATCAGGTGATAGTAATATCTGGAGAGACTGGCTGTGGTAAAACCACTCAACTTCCTCAATATGTATTAGAGTCAGAAATAGAGTCTGGCCGTGGAGCATTTTGCAGCATTATTTGCACACAGCCTCGAAGGATATCGGCAATGGCAGTGTCAGAGAGAGTGTCAGCTGAGAGAGGAGAGGCTCTTGGTGAAACAGTTGGTTTCAAAGTTCGATTAGAAGGAATGAAAGGGAAAAACACCCATCTGCTGTTTTGTACCAGTGGTATATTACTTCGAAGGTTGCTGAGTGATCGAAACCTGAATGGTATAACCCATGTTTTTGTTGATGAAATTCACGAGCGAGGCATGAATGAAGACTTTTTACTGATTGTGTTAAAGGATCTTCTTCCACGTCGTCGGGATTTAAGATTGGTTTTAATGAGTGCCACCTTGAATGCTGAGCTTTTTTCTAATTATTTTGCAAGTGCACCAACATTTCATATCCCGGGTTTCACCTACCCTGTAAGAGCTCACTTTTTAGAAGATGTTCTGGAAGTGACTGGATATAAGTTGACTTCCTTCAACCAAGTTGATGATTATGGTCAAGAGAAATTGTGGAAAACGCAAAAACAGCTAGCACCGCGGAAAAGAAAAAATCAGATCACTGCACTTGTTGAGGATGCTCTTTCTAAATCGAGCTTTGAGAGCTATAGTTCCAAGGCACGTGACTCGCTAGCATCATGGTCACCTGACTGCATAGGTTTTAATCTCATTGAGGCTGTTCTATGCCATATATGTCGGAAGGAACGACCAGGTGCTGTCTTGGTATTTATGACTGGGTGGGAGGATATAAGCTGCTTAAGAGATCAGCTTAAATCACATCCTCTCTTAGGAGATCCAAATAGGATTCTGCTTCTAACATGTCATGGTTCAATGGCTACTTCAGAACAGAAACTCATATTTGAGAGGCCACCTCCTAATGTAAGGAAAGTAATACTTGCCACAAATATGGCAGAGGCAAGTATTACAATCAATGACATAGTTTTTGTAATTGACTGCGGAAAAGCAAAAGAGACCACGTATGATGCTTTGAATAACACGCCATGTCTACTCCCTTCTTGGATTTCAAAGGCATCTGCTCGGCAGAGAAGGGGTAGGGCTGGTCGTGTGCAGCCAGGAGAATCCTACCACCTTTACCCCAAATGTGTTTATGAAGCCTTTTCTGAATATCAACTTCCTGAGCTACTGAGAACACCCTTGAACTCTCTTTGCTTGCAAATTAAAAGTTTGCAGGTTGAGAGCATAGGAGAGTTCTTATCAGCAGCTTTGCAGGCACCAGAGCGACGAGCTGTCCAAAATGCTATTGATTTTCTCAAGTTGATTGGAGCACTAGATGAGAAAGAAAATCTTACCAATCTTGGGAAGTTGCTCTCGATGCTTCCGGTTGATCCCAAACTGGGAAAAATGTTAATAATGGGAGCTATATTTCGTTGCTTTGATCCTGTTCTTACAGTAGTCGCTGGCCTCAGTGTCAGGGATCCTTTTCTTTTGCCCCAAGACAAGAGAGATTTAGCAGGGACTGCAAAGTCTAGGTTTTCTGCTAAAGATTACAGTGATCATATGGCTCTTGTTCGTGCATATGAAGGATGGAAAGATGCAGAAAGAGAAGGATCTGCTTACGAATACTGCTGGAGAAACTTCCTCTCTGCCCAAACTCTTCAGGCTATCCATTCACTTCGGAAGCAGTTTAGCTTTATCCTGAGAGACGCCGGTTTGGTAGAATCTGATGCAAGCATTAACAATAAATTGAGTCACAATCAGTCTCTAGTTCGTGCAGTCATTTGTGCTGGACTTTTTCCTGGCATAGCATCAGTTGTGCACAGGGAGACATCCATGTCATTTAAAACAATGGACGACGGCCAGGTTTTATTATATGCAAATTCAGTGAATGCACGTTACCAGACCATTCCTTACCCATGGCTAGTTTTTGGTGAAAAAGTGAAGGTCAACGCTGTTTTCATCCGTGATTCCACTGGTGTATCTGATTCAATACTTATCCTTTTTGGTGGTGCTCTAAGTAATGGGATACAGGCTGGGCATCTGAGAATGTTAGATGGGTATGTTGACTTCTTCATGGATCCCAATTTAGCTGACTGTTATTTGAAGCTTAAGGAAGAGCTTGATAAGCTTCTCCAAAAGAAGCTAGAAGATCCTAGCATCGACATTCACAAGGAAGGGAAGTACTTGATGCTTGCTGTTCAGGAACTAGTCTTAGGGGATCAATGTGAGGGAAGATTCGTATTTGGCCGAGAAAGCCGGAAGCCTAGGGCCTCCAATGATGAGAATAAATTCACAAAAGATGGGACAAACCCCAAAAGCTTGCTTCAAACACTGTTGATGAGAGCAGGGCACTCCCCTCCTAAATACAAAACAAAACATCTCAAGACAAACGAGTTTCGGGCACTGGTCGAGTTTAAAGGAATGCAGTTTGTTGGTAAGCCCAGGAGAAACAAGCAACTTTCAGAAAGGGATGCTGCTATAGAGGCATTGGCTTGGTTGACTCACACCTCTGAAAATAATCAGCATGAAGATGATAAGTCTCCTCCCGATGTCACTAACAACATGCTAAAGCTGCTAGGAAAACGCAGAAAATCAAAGCGACGGTAA 3375 0.4305 MHKPMHAASFLISRFNSLHYRYVKPLIPTRLFSRYSLEQFSDDDYDCDFETHQASSTVANVDEWKWKLSMLLRSEKDQEIVSRDKKDRRDYEQIANLAKRMGLYSEVFGKVIVASKVPLPNYRPDLDDKRPQREVVVPLSLQRRVEGLLQEYLDRLQLNSEKTTENVDDFKSINEVKNVDMDENADSYVDGSVMEKVLQKKSLRMRNMQRAWQESPEGRKMLEFRRSLPSFKEKEGLLQAIARNQVIVISGETGCGKTTQLPQYVLESEIESGRGAFCSIICTQPRRISAMAVSERVSAERGEALGETVGFKVRLEGMKGKNTHLLFCTSGILLRRLLSDRNLNGITHVFVDEIHERGMNEDFLLIVLKDLLPRRRDLRLVLMSATLNAELFSNYFASAPTFHIPGFTYPVRAHFLEDVLEVTGYKLTSFNQVDDYGQEKLWKTQKQLAPRKRKNQITALVEDALSKSSFESYSSKARDSLASWSPDCIGFNLIEAVLCHICRKERPGAVLVFMTGWEDISCLRDQLKSHPLLGDPNRILLLTCHGSMATSEQKLIFERPPPNVRKVILATNMAEASITINDIVFVIDCGKAKETTYDALNNTPCLLPSWISKASARQRRGRAGRVQPGESYHLYPKCVYEAFSEYQLPELLRTPLNSLCLQIKSLQVESIGEFLSAALQAPERRAVQNAIDFLKLIGALDEKENLTNLGKLLSMLPVDPKLGKMLIMGAIFRCFDPVLTVVAGLSVRDPFLLPQDKRDLAGTAKSRFSAKDYSDHMALVRAYEGWKDAEREGSAYEYCWRNFLSAQTLQAIHSLRKQFSFILRDAGLVESDASINNKLSHNQSLVRAVICAGLFPGIASVVHRETSMSFKTMDDGQVLLYANSVNARYQTIPYPWLVFGEKVKVNAVFIRDSTGVSDSILILFGGALSNGIQAGHLRMLDGYVDFFMDPNLADCYLKLKEELDKLLQKKLEDPSIDIHKEGKYLMLAVQELVLGDQCEGRFVFGRESRKPRASNDENKFTKDGTNPKSLLQTLLMRAGHSPPKYKTKHLKTNEFRALVEFKGMQFVGKPRRNKQLSERDAAIEALAWLTHTSENNQHEDDKSPPDVTNNMLKLLGKRRKSKRR* 1125
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0674 1124 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 846 927 IPR011709 -
Lan13g0674 1124 Gene3D - 490 646 IPR027417 -
Lan13g0674 1124 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 493 667 IPR001650 -
Lan13g0674 1124 SMART ultradead3 225 419 IPR014001 -
Lan13g0674 1124 Pfam Helicase associated domain (HA2) 690 776 IPR007502 GO:0004386
Lan13g0674 1124 SUPERFAMILY dsRNA-binding domain-like 1020 1100 - -
Lan13g0674 1124 MobiDBLite consensus disorder prediction 1092 1124 - -
Lan13g0674 1124 PANTHER ATP-DEPENDENT RNA HELICASE 41 1019 - -
Lan13g0674 1124 Gene3D - 669 771 - -
Lan13g0674 1124 Pfam Double-stranded RNA binding motif 1027 1089 IPR014720 -
Lan13g0674 1124 PANTHER DEXH-BOX ATP-DEPENDENT RNA HELICASE DEXH5, MITOCHONDRIAL 41 1019 - -
Lan13g0674 1124 CDD SF2_C_RHA 482 635 - -
Lan13g0674 1124 Pfam DEAD/DEAH box helicase 239 389 IPR011545 GO:0003676|GO:0005524
Lan13g0674 1124 SMART ha2_5 689 780 IPR007502 GO:0004386
Lan13g0674 1124 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 237 795 IPR027417 -
Lan13g0674 1124 Gene3D - 177 406 IPR027417 -
Lan13g0674 1124 Pfam Helicase conserved C-terminal domain 496 626 IPR001650 -
Lan13g0674 1124 CDD DEXHc_RHA-like 244 404 - -
Lan13g0674 1124 SMART helicmild6 521 627 IPR001650 -
Lan13g0674 1124 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 238 405 IPR014001 -
Lan13g0674 1124 SMART DRBM_3 1027 1090 IPR014720 -
Lan13g0674 1124 Gene3D - 1007 1095 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0674 Lan-Chr13 5779323 5798265 Transposed