Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0671 ATGAAGAGGTCTCATGCATCTTCTTGTTCATCTTCTTCTTCTGTTGTGTTTGAATCTCCCATTGAAAAAAGAAGGCCCAAGCATCCAAGAAGGAATGTTAAGTCAAAACAAACTAATAAGCAGAACAAAACTACTGTCGGAAGAAGCTCCATTTATAAAGGAGTTACAAGGCATAGATGGACTGGAAGGTTTGAAGCTCACTTATGGGATAAGAGTTCTTGGAATAATATTCAGAACAAGAAGGGTATACAAGTTTATTTGGGGGCATATGATTGTGAAGAAGCTGCAGCACGTACCTATGATCTTGCAGCCCTGAAGTATTGGGGAAATGATGCAACTTTAAATTTCCCGATTGAAACGTATAGCAAGGACCTTGATGAAATGAAGAAGGTCACAAAAGAAGAATTCTTGGCCAATTTAAAGCGTCAAAGCAGTGGCTTTTCTAGAGGTGTTTCTAAGTACCGTGGGGTAGCAAGGCATCACCATAATGGTCGCTGGGAAGCTCGAATTGGGAGAGTATGTGGTAACAAATATCTTTACTTAGGAACATATAAAACTGAAGAGGAAGCAGCTATAGCATATGACATGGCAGCAATAAAGCATAGAGGACTAAATGCAGTGACCAATTTTGAAATAAGTAACTATAGTGACAAAATAAAGATGAAAAATTATCCATCTGAAGAAGCTGAAACACAAACAGAAACAGCTCCTAGCTCAATAGATTCTGAAGAAGCAGAAGTAGAACAGAAAAATACACCACCTTCACTAGAAAATCTGCATAAGGAACCTCAAGAGCCACAAATCCAAAACACCAACTTTTTTATAAGTGAGGAATCCTCTGCAGTTATTCCGGTGGAGCATGTTTTTGAACAGGACATGCCATGGAACTTCATGGATACTAGTCTATCTCAGTTTCAAGATATAGAGATGGGTTTGAGCAAAGAAGAGAATTTATCAAGCATGTTTAATGGTGGAGGCTTTGAGGATGACATTGAATTTTTGTTCAGCACAGATCCTGGTGGTGGAGAATTTAATTTCAATGAAGTTTTGGATAATATAGTTGAGTGTGGAGATGGTGGTGGTGGTGCTGAAGCAATGGTGGATAAAAACAAGCAGAAGATACTGTCCTCAGCTTCTTCACCATCATCATCATCTACAACAACTACAGTTTCTTGTGACTATTCTTTATGA 1191 0.3854 MKRSHASSCSSSSSVVFESPIEKRRPKHPRRNVKSKQTNKQNKTTVGRSSIYKGVTRHRWTGRFEAHLWDKSSWNNIQNKKGIQVYLGAYDCEEAAARTYDLAALKYWGNDATLNFPIETYSKDLDEMKKVTKEEFLANLKRQSSGFSRGVSKYRGVARHHHNGRWEARIGRVCGNKYLYLGTYKTEEEAAIAYDMAAIKHRGLNAVTNFEISNYSDKIKMKNYPSEEAETQTETAPSSIDSEEAEVEQKNTPPSLENLHKEPQEPQIQNTNFFISEESSAVIPVEHVFEQDMPWNFMDTSLSQFQDIEMGLSKEENLSSMFNGGGFEDDIEFLFSTDPGGGEFNFNEVLDNIVECGDGGGGAEAMVDKNKQKILSSASSPSSSSTTTTVSCDYSL* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0671 396 MobiDBLite consensus disorder prediction 224 264 - -
Lan13g0671 396 CDD AP2 50 118 IPR001471 GO:0003700|GO:0006355
Lan13g0671 396 SMART rav1_2 51 123 IPR001471 GO:0003700|GO:0006355
Lan13g0671 396 SMART rav1_2 153 217 IPR001471 GO:0003700|GO:0006355
Lan13g0671 396 Gene3D AP2/ERF domain 152 213 IPR036955 GO:0003700|GO:0006355
Lan13g0671 396 Gene3D AP2/ERF domain 51 119 IPR036955 GO:0003700|GO:0006355
Lan13g0671 396 Pfam AP2 domain 152 203 IPR001471 GO:0003700|GO:0006355
Lan13g0671 396 Pfam AP2 domain 51 109 IPR001471 GO:0003700|GO:0006355
Lan13g0671 396 SUPERFAMILY DNA-binding domain 50 119 IPR016177 GO:0003677
Lan13g0671 396 MobiDBLite consensus disorder prediction 1 18 - -
Lan13g0671 396 PRINTS Ethylene responsive element binding protein signature 52 63 IPR001471 GO:0003700|GO:0006355
Lan13g0671 396 PRINTS Ethylene responsive element binding protein signature 193 213 IPR001471 GO:0003700|GO:0006355
Lan13g0671 396 ProSiteProfiles AP2/ERF domain profile. 153 211 IPR001471 GO:0003700|GO:0006355
Lan13g0671 396 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 376 - -
Lan13g0671 396 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WRI1 1 376 - -
Lan13g0671 396 MobiDBLite consensus disorder prediction 228 242 - -
Lan13g0671 396 ProSiteProfiles AP2/ERF domain profile. 51 117 IPR001471 GO:0003700|GO:0006355
Lan13g0671 396 CDD AP2 152 213 IPR001471 GO:0003700|GO:0006355
Lan13g0671 396 SUPERFAMILY DNA-binding domain 152 213 IPR016177 GO:0003677
Lan13g0671 396 MobiDBLite consensus disorder prediction 375 396 - -
Lan13g0671 396 MobiDBLite consensus disorder prediction 1 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0671 Lan-Chr13 5742170 5746812 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0671 19 253 AP2-EREBP Transcription Factor Family AT5G57390 55.602 2.13e-84 262
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Lan13g0671 AP2 5.4e-12 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0735 7 6278274 6282581 Lan13g0671 13 5742170 5746812 LSH
Lan8g1288 8 19380127 19385406 Lan13g0671 13 5742170 5746812 LSH