Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0668 ATGGAATCTTTTGCTAACATTTTCTTTATGTTCTTTATTACCTTTACCAACATCAAACTTTGCTTATCAGACTATGATAATATACAAGACAATTGCCCAGCAATTTCACCGAAAATGCAGACCATATTCATCAATGGCCTACCCTGCAAAAGTTCAGCTAATATAACTGCTCAGGATTTCAGGACTTCAGAATTAAGCAACCCTGGTTCTACAGATATTTTTGGTGCAGCCATAAAAATTGTCACTGCTGCTGAGTTTCCTGGCCTTAATACTCTCGGCCTCGCGATCGGGAGAATCGACATTGATGAAGATGGCTTGGTAAACTTCCATTATCACCCTAGAGCTACTGAGATTATATTTGTTACCAAAGGTGTATTGCTTGCTGGATTTATTGATACCAAAAACCAAGTTTTCCAAGAGTTTCTTAGTGTAGGTGATGTTTTTGTGTTCCCTAAGGGTTTGTTTCACTTCATTCTAAATCATGGTTTTCAAGATGCCACTTTTGTCTCAGTTTTCAATAGCCAAAACCCAGGGCTTGTTTCTATCACTGCTACAACTTTTGGCAACACATTGGAATCACTAGAGAAGGTAAAGAAGAAACTCATCTCACTTTCTGCTTATGAAGTTCATGATAATGCCATTTTAACCATGCCAAGGTTGGAAAGCATTTTCAGCTAG 678 0.3805 MESFANIFFMFFITFTNIKLCLSDYDNIQDNCPAISPKMQTIFINGLPCKSSANITAQDFRTSELSNPGSTDIFGAAIKIVTAAEFPGLNTLGLAIGRIDIDEDGLVNFHYHPRATEIIFVTKGVLLAGFIDTKNQVFQEFLSVGDVFVFPKGLFHFILNHGFQDATFVSVFNSQNPGLVSITATTFGNTLESLEKVKKKLISLSAYEVHDNAILTMPRLESIFS* 226
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0668 225 CDD cupin_OxOx 24 193 - -
Lan13g0668 225 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 4 10 211 - -
Lan13g0668 225 Pfam Cupin 72 197 IPR006045 -
Lan13g0668 225 Gene3D Jelly Rolls 23 213 IPR014710 -
Lan13g0668 225 SUPERFAMILY RmlC-like cupins 26 188 IPR011051 -
Lan13g0668 225 PANTHER GERMIN-LIKE PROTEIN SUBFAMILY 3 MEMBER 3 10 211 - -
Lan13g0668 225 PRINTS Germin signature 110 130 IPR001929 GO:0030145
Lan13g0668 225 PRINTS Germin signature 140 160 IPR001929 GO:0030145
Lan13g0668 225 PRINTS Germin signature 173 188 IPR001929 GO:0030145
Lan13g0668 225 ProSitePatterns Germin family signature. 105 118 IPR019780 GO:0030145
Lan13g0668 225 SMART Cupin_1_3 63 198 IPR006045 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0668 Lan-Chr13 5721084 5721928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0668 27 193 Miscellaneous Gene Families AT1G72610 41.071 5.29e-37 127
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan8g1280 8 19306234 19307301 Lan13g0668 13 5721084 5721928 LSH