Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0666 ATGTCTTCCTTACAATTCTATGGTAAAGTTGATGAATCTGATCAACTTGTTCTCCTAGCTCGAAGGAGAACACGAAAAAGAATCACTATCATAGCATTGTCCACAATAGTCCTTGTTTCTATTGTATGTGCTGCTGTTTTTGGAACTGTGGCTCATAAAAATGATAATGATAATACAAATGCTGATGCCAATTCTCTTGCAAATGCTGTGAAAGTGGTTTGTGATGTGACTTTGTACAAGGATGCATGTTATAGAAGCCTTGGTCCTAAGGTGCAATCGGGTCAGGTTACACCTGAGGATTTGTTCAAGTTGTCAATACAAGTGGCCTTAGCTGAGGTTAACAATGCTGCTAAGAAATTTTCTGATCAGGGAAATTTTGATGTAGTTAATACTGATAAGAGGACCAAGGAAGCTTTGAAAAATTGCCATGATCTTTTGGGTCTTGCAATTGATCATCTTAATAGTTCTCTATCTTCTGGTGAAAATTCTTCATTGCTCGATGTTTTGGAGGATCTTAAGACTTGGTTGAGTGCTGCAGGTACTTACCAGCAGACATGCATTGAGGGGTTGGAAGAGACAAAAGAATCATTGAAGAACACTGCTGAAAGCTACCTCCAAGATTCTACAGAATTCACTAGTAACAGTCTTTCCATTATTACTTGGATTGACAAGGCTGTAACCTCAGTGAACTTGAGGCGCTTATTGAGTTTGAATAATCTGAATGAAGAACCAGAGTGGCTTCATTCCAATGACCGGAAGCTACTTAAAAAACCTGATTTGAAAAAGATAGCTGATATTGTTGTAGCCAAAGATGGCAGTGGGAAATATACAACAATTTCTGAAGCACTTAATAATGTTGTTGCTAAAAGTGACAACAGAACTGTGATCTATGTGAAGAAAGGGATTTACGTTGAAAATGTAGCTGTAGATAAGACCAAATGGAATGTCATGCTCATTGGTGATGGTAAGAGTGCTTCTATTATATCTGGAAGCCTTAACTTTGTGGATGGCACCCCAACATTTTCAACTGCAACAATTGCTATACAAGGTAAGAATTTCATTGCTAGAGACATGGGCTTTGCAAACACAGCTGGTCCAAGCAAGCACCAAGCAGTGGCACTATTAACTTCTTCTGATCAGTCAGTGTACTATAGATGTCAATTTGATGCATATCAAGACACTCTTTATGTTCAAGCCAATCGCCAATTCTTCAGGGAATGTGATATATATGGCACAGTTGATTTCATTTTTGGAAATTCTGCAGTTGTCATACAAAACTCTAACATTTTACCTAGGGTTCCCTTAAGTGGCCAACAAAACACAATCACAGCACAAGGCAAATCTGACCCTAATATGAACACAGGACTTTCATTTCAGAATTGCACCATTTCACCATTTGGTAACTTGGGTTCTGTCCAAACTTACCTTGGAAGACCCTGGAGGGATTACTCAACCACATTGTTTATGCAATCCAATATATCAAACATCATTCACCCAAATGGTTGGTTACCATGGGTTGGAAATTCAGCACCAGATACTATATTTTATGCAGAATATCAGAATTTTGGAGCAGGTGCTTCAACAAATAATAGGGTTAAGTGGAATGGTGTGATAACCAACATTACTAGCAAACAAGCTACCAAGTTTACAGTTAAGACCTTTATTTCAGGAAATCAATGGATTTCAGCTTCTGGTGCTCCCTATAGATCTTCTCTGTGA 1719 0.3834 MSSLQFYGKVDESDQLVLLARRRTRKRITIIALSTIVLVSIVCAAVFGTVAHKNDNDNTNADANSLANAVKVVCDVTLYKDACYRSLGPKVQSGQVTPEDLFKLSIQVALAEVNNAAKKFSDQGNFDVVNTDKRTKEALKNCHDLLGLAIDHLNSSLSSGENSSLLDVLEDLKTWLSAAGTYQQTCIEGLEETKESLKNTAESYLQDSTEFTSNSLSIITWIDKAVTSVNLRRLLSLNNLNEEPEWLHSNDRKLLKKPDLKKIADIVVAKDGSGKYTTISEALNNVVAKSDNRTVIYVKKGIYVENVAVDKTKWNVMLIGDGKSASIISGSLNFVDGTPTFSTATIAIQGKNFIARDMGFANTAGPSKHQAVALLTSSDQSVYYRCQFDAYQDTLYVQANRQFFRECDIYGTVDFIFGNSAVVIQNSNILPRVPLSGQQNTITAQGKSDPNMNTGLSFQNCTISPFGNLGSVQTYLGRPWRDYSTTLFMQSNISNIIHPNGWLPWVGNSAPDTIFYAEYQNFGAGASTNNRVKWNGVITNITSKQATKFTVKTFISGNQWISASGAPYRSSL* 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0666 572 TIGRFAM PME_inhib: pectinesterase inhibitor domain 37 222 IPR006501 GO:0004857
Lan13g0666 572 Gene3D Invertase/pectin methylesterase inhibitor family protein 67 223 IPR035513 -
Lan13g0666 572 Gene3D - 261 572 IPR012334 -
Lan13g0666 572 CDD PMEI-like_3 73 224 - -
Lan13g0666 572 SMART PMEI_2 65 218 IPR006501 GO:0004857
Lan13g0666 572 Coils Coil 187 207 - -
Lan13g0666 572 Pfam Pectinesterase 265 558 IPR000070 GO:0030599|GO:0042545
Lan13g0666 572 ProSitePatterns Pectinesterase signature 1. 290 309 IPR018040 -
Lan13g0666 572 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 68 222 IPR035513 -
Lan13g0666 572 Pfam Plant invertase/pectin methylesterase inhibitor 69 218 IPR006501 GO:0004857
Lan13g0666 572 PANTHER PECTINESTERASE 5 569 - -
Lan13g0666 572 SUPERFAMILY Pectin lyase-like 264 568 IPR011050 -
Lan13g0666 572 ProSitePatterns Pectinesterase signature 2. 409 418 IPR033131 -
Lan13g0666 572 PANTHER PECTINESTERASE 5 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0666 Lan-Chr13 5706468 5710171 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0666 7 572 Carbohydrate Esterase AT3G10710 54.035 0.0 638