Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0639 ATGGGAAACTCTTCTGGTACAAAGCGTGATACTCAATCTTCAAGAAATGTTAAAGACAGAACATCGTCTTCCTCCACTATAAATCTGTCACCACCGCCAGTACAAACCTATGTTCCAAGTCATCATGGGTCAGGTCAGAGTTCAACAAAGGTGTCCATAAAACAGAAGTATGGTTTCATTCCTGATAACTTCACCACCCTTCAACAGGTTACAACTGCCTTGAGGGAAGAAGGTTTAGAATCATCAAATTTGGTACTTGGAATTGATTTCACTAAAAGCAATGAATGGACTGGCAAAATCTCATTCAAGAATAAAAGCCTGCATGCTATTGGAAACACACCTAACCCCTATGAGAAGGCCATCTCTATTATTGGCAAGACTTTAGCTCCCTTTGATGATGACAACTTGATTCCTTGTTTTGGTTTTGGTGATGCTACTACGCATGATCATGAAGTGTTTAGCTTTCACAATGATCATTCACCTTGCCATGGTTTTGAGGAAGTTCTGGATTGCTATAAAAAAATAGTTCCAAACTTGAGTCTATCAGGACCAACTTCCTATGCTCCGGTGATTGAGGCTGCAATAGATATAGTTGAGAAAGCTGGTGGCCAATTCCATGTGTTGGTTATTGTTGCAGACGGTCAGGTTACAAGAAGTGTCAACACTGATGATGGAGAACTTAGTCCTCAAGAAGATAGGACAATCAAAGCAATCGTTGATGCAAGCTCATATGCGCTTTCTATTATTCTGGTTGGAGTTGGTGATGGACCTTGGGAAGACATGAAAAAGTTTGATGACAAGATACCAGCACGTGATTTTGACAATTTTCAGTTTGTTAACTTCTCTGACATAATGTCTAAGAATTCAAGCTCCTCTGAGAAAGAAACGGCTTTTGCTCTGGCTGCTCTAATGGAGATACCTTTCCAATATAAGGCCACCATTGAATTTGGATTACTTGGTCATGCAACAGGAAGAGCAAAGAAAATAGTTCCAAGACCTCCTCCAGTTCCTTATTCTCGGCAAATGGCTCCAGCTCATATTCCCAGCTATATGCCAGCATCAACGGAAGATGAGCGAAACCAAATGGTGTGTGCCATTTGTCTGACCAATGAAAAGGATTTGGCCTTTGGATGTGGTCACATGGCTTGCAGAGATTGTGGAGCCAGGTTAAGCAATTGTCACATATGCCGAGAGAGGATCACCAATCGTCTTAGGGTGTTCACTGGATGA 1230 0.4154 MGNSSGTKRDTQSSRNVKDRTSSSSTINLSPPPVQTYVPSHHGSGQSSTKVSIKQKYGFIPDNFTTLQQVTTALREEGLESSNLVLGIDFTKSNEWTGKISFKNKSLHAIGNTPNPYEKAISIIGKTLAPFDDDNLIPCFGFGDATTHDHEVFSFHNDHSPCHGFEEVLDCYKKIVPNLSLSGPTSYAPVIEAAIDIVEKAGGQFHVLVIVADGQVTRSVNTDDGELSPQEDRTIKAIVDASSYALSIILVGVGDGPWEDMKKFDDKIPARDFDNFQFVNFSDIMSKNSSSSEKETAFALAALMEIPFQYKATIEFGLLGHATGRAKKIVPRPPPVPYSRQMAPAHIPSYMPASTEDERNQMVCAICLTNEKDLAFGCGHMACRDCGARLSNCHICRERITNRLRVFTG* 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0639 409 Pfam Zinc finger, C3HC4 type (RING finger) 361 401 - -
Lan13g0639 409 ProSiteProfiles Zinc finger RING-type profile. 364 397 IPR001841 -
Lan13g0639 409 PANTHER COPINE FAMILY PROTEIN 1 21 407 - -
Lan13g0639 409 SMART VWA_4 81 284 IPR002035 -
Lan13g0639 409 MobiDBLite consensus disorder prediction 1 48 - -
Lan13g0639 409 SUPERFAMILY RING/U-box 359 404 - -
Lan13g0639 409 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 349 409 IPR013083 -
Lan13g0639 409 SUPERFAMILY vWA-like 82 265 IPR036465 -
Lan13g0639 409 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RGLG4 21 407 - -
Lan13g0639 409 Pfam Copine 106 319 IPR010734 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0639 Lan-Chr13 5375790 5380424 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan5g0747 5 19108096 19117977 Lan13g0639 13 5375790 5380424 PCT
Lan13g0639 13 5375790 5380424 Lan5g0747 5 19108096 19117977 PCT