Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0634 ATGTCGGTTCTAATCGTAACAAGCTTGGGAGACCTAGTCGTAGATTTGCACACAGACAAGTGTCCTTTAACCTGCAAGAATTTCTTGAAGCTTTGTAAAATTAAGTACTACAATGGATCTCTTTTTCACAGTGTTCAAAAAGATTTCACTGCTCAGACCGGTGATCCAACCGCCACCGGAACTGGCGGTGATTCCATCTACAAGTTTCTTTATGGTGAGCAAGCGCGCTTTTTCAGCGACGAAATTCATTTAGATCTTAAACATTCTAAGACTGGAACATTTGCTATGGCTAGTGCTGGAGAGAATCTTAGTGCTTCACAGTTTTATATCACTCTGCGTGATGACCTTGATTACCTTGACGGAAAGCACACAGTTTTTGGTGAGCTAGCTGAAGGATTGGAGACTTTGGCTAGAATAAATGAGGCTTATGTGGATGAGAAGAGCAGGCCATATAAAAATATCCGAATCAAGCACACATACATCTTGGAGGATCCTTATGATGATCCTCCTCAGCTAGCTGATATGATTCCTGATGCTTCACCAGAGGGAAAACCTAAAGATGAGGTTGATGATGGTGTGAGGCTTGAAGATGATTGGGTACCCATGGATGAACAATTAGACCCATCAGAGCTTGAGGAGGTTATTAGAGATAAGGAAGCACACTCTAGAGCAGTTATACTTGAGAGTATCGGGGATATTCCTGATGCTGAAATTAAGCCTCCAGATAATGTACTTTTTGTATGTAAATTGAACCCAGTTACTGAGGATGAGGACTTGCATACAATCTTTTCACGCTTTGGAAATGTTTCCTCGGCTGAAATCATCCGTGATCACAAGACTGGTGACAGTTTATGCTATGCTTTCATTGAGTTTGATGACGTACAGGCATGTGAACAGGCATATTTTAAGATGGATAATGCTTTGATTGATGATCGAAGGATACATGTGGATTTTAGTCAAAGTGTGGCAAAACTGTGGTCACAGTACAGGCGGAAGGATCAAAAGGGTAAAGGTGGTGGTTGCTTTAAATGTGGTTCTACAAATCATATTGCCAAGGATTGCACTGGAGATGATACAACGAAACAACAACCTGCAAAATACATCTTGAAGGATGATAATACCCAACGTGGTGGACACAATGCAAGATATGAAATGGTTTTTGATGAAGATAACACCGGAAGTCCTAGGCAACACATAAAACATCAAAGGCATGACAGGGATGACCAAATTGAGAAAAAAAGTAGGAAGGAAGATTTTAAAGTTCCTGTTCGTGGAAGTAGTAGGGATCAGGAGATGGTAGGCTTAAACAACAGAGACAGGCATGGTGATAGAAGCAGAGGTCACCAGGGAAATCGAGATGATAAAGCACGATCTGAAAGAGGTACAAGAGATTTGGATTCCCACACTGATAAGAAAGACAGAGAAAAGCACATGGCAAGGCACAGAGGTGATGAATACAAGCGGAAAGATGAGCCAGACTCAAGAAAAAGAGACTTGGATGATAGATACTCAGAAAGACAGGGTAGTGGTGATTATAGGAAAAAAACAGATTCTAGCCATTTGGTAGAAAGAAGGGATGACAGAGATAACAGGAAGAGACCCGAAGACAGTGGACAGCAAGATATGAAGAGTGATCCCAGACGAAGAAAACGAAGTCCGGATGATGACCACAGACATAGAAGGGAGGATGAAGATCGCAGACATAGAAGGGAGGATGATGATCACAGACAAAAAAGGGAAGAACATGGACATGAACGTGGACAAAGAAGAAGGGATACTGAATCTGATGACTATCCTTATAGGAGGCATCATGGTGACAGAAGATAA 1827 0.4165 MSVLIVTSLGDLVVDLHTDKCPLTCKNFLKLCKIKYYNGSLFHSVQKDFTAQTGDPTATGTGGDSIYKFLYGEQARFFSDEIHLDLKHSKTGTFAMASAGENLSASQFYITLRDDLDYLDGKHTVFGELAEGLETLARINEAYVDEKSRPYKNIRIKHTYILEDPYDDPPQLADMIPDASPEGKPKDEVDDGVRLEDDWVPMDEQLDPSELEEVIRDKEAHSRAVILESIGDIPDAEIKPPDNVLFVCKLNPVTEDEDLHTIFSRFGNVSSAEIIRDHKTGDSLCYAFIEFDDVQACEQAYFKMDNALIDDRRIHVDFSQSVAKLWSQYRRKDQKGKGGGCFKCGSTNHIAKDCTGDDTTKQQPAKYILKDDNTQRGGHNARYEMVFDEDNTGSPRQHIKHQRHDRDDQIEKKSRKEDFKVPVRGSSRDQEMVGLNNRDRHGDRSRGHQGNRDDKARSERGTRDLDSHTDKKDREKHMARHRGDEYKRKDEPDSRKRDLDDRYSERQGSGDYRKKTDSSHLVERRDDRDNRKRPEDSGQQDMKSDPRRRKRSPDDDHRHRREDEDRRHRREDDDHRQKREEHGHERGQRRRDTESDDYPYRRHHGDRR* 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0634 608 SMART c2hcfinal6 340 356 IPR001878 GO:0003676|GO:0008270
Lan13g0634 608 MobiDBLite consensus disorder prediction 388 425 - -
Lan13g0634 608 SUPERFAMILY Cyclophilin-like 1 176 IPR029000 -
Lan13g0634 608 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 245 315 IPR000504 GO:0003723
Lan13g0634 608 Pfam Zinc knuckle 340 355 IPR001878 GO:0003676|GO:0008270
Lan13g0634 608 Gene3D - 231 383 IPR012677 -
Lan13g0634 608 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 16 31 IPR002130 GO:0000413|GO:0003755
Lan13g0634 608 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 42 54 IPR002130 GO:0000413|GO:0003755
Lan13g0634 608 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 92 107 IPR002130 GO:0000413|GO:0003755
Lan13g0634 608 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 121 136 IPR002130 GO:0000413|GO:0003755
Lan13g0634 608 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 243 321 IPR000504 GO:0003723
Lan13g0634 608 CDD cyclophilin_RRM 4 169 IPR035538 -
Lan13g0634 608 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 7 161 IPR002130 GO:0000413|GO:0003755
Lan13g0634 608 MobiDBLite consensus disorder prediction 388 608 - -
Lan13g0634 608 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 4 159 IPR002130 GO:0000413|GO:0003755
Lan13g0634 608 SMART rrm1_1 244 317 IPR000504 GO:0003723
Lan13g0634 608 ProSiteProfiles Zinc finger CCHC-type profile. 341 354 IPR001878 GO:0003676|GO:0008270
Lan13g0634 608 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE-LIKE 4 1 497 IPR035542 -
Lan13g0634 608 SUPERFAMILY RNA-binding domain, RBD 229 339 IPR035979 GO:0003676
Lan13g0634 608 MobiDBLite consensus disorder prediction 433 608 - -
Lan13g0634 608 CDD RRM_PPIL4 240 322 - -
Lan13g0634 608 Gene3D - 1 172 IPR029000 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0634 7 166 U-box Gene Family AT5G67530 41.250 1.35e-31 127