Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0630 ATGGCTGTTGAGGCTCACCATCTAAACCTCTTCTCTTCTCAACTAATACACAACGGAGAAATGATGATGAATCCTATGGATGCAACCATCAACCTCTACCACAATAACTACTCCTCGCTGCTTCCTCTATCGGGAACCACTACAGCCACCGCGTCGGAAACTCTTCTCCACCCAGCGCCACCGTACAACTCCATAATCGCCGATTCGTTTCCTCCTCAGAAAACCATAACCGCTATGAAGTCTGACGTCAGCACTCTCACTTATAACAACAACAATAACAACAATGTCCCTGTATCAAGAAAACGCTCCATAGATTCCATTAATTACTCTCTACCTTACCATAAGAATCGTGCAACTAACCTTTCATTTCTCGGTGAAGACATGTCCCTCCAAATCCATCATCAACAACTCGACCTAGATAATCTCGTTTCTCAACACATGGAGAAAGTGAGAATGGAATTGGAAGAGAAGAGGAAGAGACAAGCGAGGATATTAATGGAGCTTGTCGAAGTTGGAATGATGAAGAAGCTAAAATCGAAAGAGGAAGAGATAGAAAAGATTGAGAAATTAAACTACGCTCTTGAAGAAAAGGTTAAGTCTCTATGTATCGAAAACCAGATATGGCGAGATTTGGCGCAAACAAACGAAGCAACTGCAAATACTCTGCGAACAAATCTCGTCCAAGTTCTGTCTCAGGCGAGGGATTACGACGGAGAACACGGCGGAGCCACGATGGGAGCGGTTGTTGAAGAAGCGGAGTCTTGGTGTGGAAGTAATGATGAAAATGAAGGATGGCGTATGATAGGAGGAGGTGCGCAGGATAAGGAGGTGGTTGAAGAAGGTAGTGGGAGTAGAGTAATGAAGAATGAGAATGGGAGATTGTGCAGGAAATGTGGAAAAGATGAATCGTGTGTACTCATCTTACCTTGCAGGCACTTATGTCTTTGTAATGCTTGTGCCTCTACCCTTAACACTTGTCCTATCTGTAATTCCTTCAAAAATGCTACCCTCCTTGTTAACCTTACCTAA 1029 0.4363 MAVEAHHLNLFSSQLIHNGEMMMNPMDATINLYHNNYSSLLPLSGTTTATASETLLHPAPPYNSIIADSFPPQKTITAMKSDVSTLTYNNNNNNNVPVSRKRSIDSINYSLPYHKNRATNLSFLGEDMSLQIHHQQLDLDNLVSQHMEKVRMELEEKRKRQARILMELVEVGMMKKLKSKEEEIEKIEKLNYALEEKVKSLCIENQIWRDLAQTNEATANTLRTNLVQVLSQARDYDGEHGGATMGAVVEEAESWCGSNDENEGWRMIGGGAQDKEVVEEGSGSRVMKNENGRLCRKCGKDESCVLILPCRHLCLCNACASTLNTCPICNSFKNATLLVNLT* 343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0630 342 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 1 341 IPR017066 -
Lan13g0630 342 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 2-RELATED 1 341 - -
Lan13g0630 342 PIRSF SBP1_RNase_bind 1 342 IPR017066 -
Lan13g0630 342 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 339 IPR013083 -
Lan13g0630 342 ProSiteProfiles Zinc finger RING-type profile. 295 330 IPR001841 -
Lan13g0630 342 Coils Coil 177 197 - -
Lan13g0630 342 Pfam Zinc finger, C3HC4 type (RING finger) 293 331 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0630 Lan-Chr13 5280208 5281689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0630 272 331 Miscellaneous Gene Families AT4G39050 33.333 2.84e-08 53.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0681 7 5693953 5695371 Lan13g0630 13 5280208 5281689 LSH
Lan19g0089 19 710484 711815 Lan13g0630 13 5280208 5281689 PCT
Lan9g0211 9 2606345 2608390 Lan13g0630 13 5280208 5281689 PCT
Lan13g0630 13 5280208 5281689 Lan19g0089 19 710484 711815 PCT
Lan13g0630 13 5280208 5281689 Lan9g0211 9 2606345 2608390 PCT