Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0588 ATGAAGAAGAACCGCATTGCATCAGAAAATCACTGTGATAAAAAAAAAACTCAGCAGACGAAGCGTCACTATCACAGTCCCTTAGGCTTAGGGTTCCTCTGTTCTTCTTACCAAGATTTTCAGATTTTCAACATCAACCGCTTTTTTCTCTATCCTATGGCGAAAACAAGGCCAGGTAGAAAGGACGTGGATTCCTACACCATCAAAGGCACCAACAAGATCGTTAGAGCTGGAGATTGTGTTTTGATGCGGCCTTTGGACACGACAAAGCCACCATATGTGGCGCGCGTGGAGAAGATCGATCAAGATAACAGGAGCAACATTAAGGTGCGCGTGAGATGGTACTATAGACCTGAAGAATCAATAGGGGGTAGAAGGCAGTTTCATGGAGCAAAAGAGCTTTTTTTGTCTGACCATTATGATGTTCAGAGTGCTCACACTATTGAAGGAAAGTGTGTTGTTCACTCTTTTAAGAACTACACTAAGCTTGAGAATGTAGCTGCTGAGGATTACTATTGTAGATTTGAGTATAAGGCTGCAACTGGGGCTTTCACTCCTGACCGTGTTGCTGTGTATTGCAAATGTGAGATGCCTTATAACCCGGATGATCTCATGGTACAATGTGAGGGGTGCAAGGATTGGTACCATCCTGCGTGCATGGGAATGACTATTGAAGAAGCAAAGAAACTAGAACATTTTGTATGCTCAGAATGTTCATCTGATGATGATTTGAAGAAACCCCAAGCTACATTCTCTGCATCACCAGGAGCTGATGGCAAGGTAGAGCCCAAGCGACGAAAGAGAGGACCATGA 813 0.4379 MKKNRIASENHCDKKKTQQTKRHYHSPLGLGFLCSSYQDFQIFNINRFFLYPMAKTRPGRKDVDSYTIKGTNKIVRAGDCVLMRPLDTTKPPYVARVEKIDQDNRSNIKVRVRWYYRPEESIGGRRQFHGAKELFLSDHYDVQSAHTIEGKCVVHSFKNYTKLENVAAEDYYCRFEYKAATGAFTPDRVAVYCKCEMPYNPDDLMVQCEGCKDWYHPACMGMTIEEAKKLEHFVCSECSSDDDLKKPQATFSASPGADGKVEPKRRKRGP* 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0588 270 ProSiteProfiles Zinc finger PHD-type profile. 190 241 IPR019787 -
Lan13g0588 270 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 187 251 IPR013083 -
Lan13g0588 270 MobiDBLite consensus disorder prediction 1 20 - -
Lan13g0588 270 PANTHER BNAC03G64850D PROTEIN 54 265 IPR045205 GO:0006325|GO:0035064
Lan13g0588 270 Gene3D - 51 186 IPR043151 -
Lan13g0588 270 MobiDBLite consensus disorder prediction 1 16 - -
Lan13g0588 270 ProSitePatterns Zinc finger PHD-type signature. 193 238 IPR019786 -
Lan13g0588 270 ProSiteProfiles BAH domain profile. 73 188 IPR001025 GO:0003682
Lan13g0588 270 CDD BAH_BAHCC1 74 208 - -
Lan13g0588 270 Pfam PHD-finger 192 240 IPR019787 -
Lan13g0588 270 PANTHER OS08G0421900 PROTEIN 54 265 - -
Lan13g0588 270 SMART PHD_3 192 239 IPR001965 -
Lan13g0588 270 MobiDBLite consensus disorder prediction 239 270 - -
Lan13g0588 270 SUPERFAMILY FYVE/PHD zinc finger 184 241 IPR011011 -
Lan13g0588 270 SMART BAH_4 73 188 IPR001025 GO:0003682
Lan13g0588 270 Pfam BAH domain 75 187 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0588 Lan-Chr13 4709224 4712977 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0588 93 184 Core DNA Replication Machinery Family AT4G14700 27.957 1.80e-08 53.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lan13g0588 BAH 5.8e-22 No_clan