Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan13g0362 ATGGATATGGATCATTCTTCTACTGTACAACACCAGCAAATGTCTAACCAGTCACTGGAAAACATGATAGCATGTTCAAAATCAGCACAACATGACAAGAAACCAAAACCTCAGCCAGAACAAGCTCAAAAATGCCCAAGATGTGACTCCTCCAACACCAAATTCTGCTACTATAACAACTACAGTCTTTCTCAGCCAAGGTATTTCTGCAAGTCTTGTAGGAGATATTGGACAAAAGGAGGAACTCTTAGGAATGTTCCAGTTGGTGGAGGATGCAGGAAAAACAAGAGATCATCATCATCATCATCTTCATCAAAGAGATATCAAGATCAAACATTTACACCAAATCCAAACTCTCTCATTGGTCTCACACCAATGTCTTATGACTCAAATGACCTTAACCTTGCTTTAGCTAGGCTTCAAAAGGGGTCAATGGGTTATGATGACCATGATCTTTCCATCATGGGTAACCACACAAACACAACCACACCATGTGATAACATTCTTGGAAATTTAGGTATGAATCCTTCAAACCCTGGATTCTTAGATGCTCTTAGAAGTGGGTTCCTTGGAACTCATAACAATAACAATAGTATGCAAAATCTGTACTATGGTTATGGGCATGGTGAGAATATGAGTGATGTGGATAATGGAAACAATGGTTGTGGAGAGATGATGCTACCTTATGATAATCAACAACAAATGAGTATTGCTACTACTCAAGCAGTGTCTGTCACTACTATGAAACAAGAACTGTGCAATGCAAGGGACCAAAGTGAAAACAAGGTTTTGTGGGGTTTTCCTTGGCAGCACAATGGAGGAGACACAAACATGGGTGAAGCAATTGATTCAGGAAGAGCAAGTTGGAACAATGGTTTCACTTCATCATGGCATGGACTTCTCAATAGTCCTCTAATGTAG 921 0.3985 MDMDHSSTVQHQQMSNQSLENMIACSKSAQHDKKPKPQPEQAQKCPRCDSSNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSSSSKRYQDQTFTPNPNSLIGLTPMSYDSNDLNLALARLQKGSMGYDDHDLSIMGNHTNTTTPCDNILGNLGMNPSNPGFLDALRSGFLGTHNNNNSMQNLYYGYGHGENMSDVDNGNNGCGEMMLPYDNQQQMSIATTQAVSVTTMKQELCNARDQSENKVLWGFPWQHNGGDTNMGEAIDSGRASWNNGFTSSWHGLLNSPLM* 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan13g0362 306 PANTHER DOF ZINC FINGER PROTEIN DOF3.2-LIKE 10 305 - -
Lan13g0362 306 ProSiteProfiles Zinc finger Dof-type profile. 43 97 IPR003851 GO:0003677|GO:0006355
Lan13g0362 306 Pfam Dof domain, zinc finger 41 97 IPR003851 GO:0003677|GO:0006355
Lan13g0362 306 MobiDBLite consensus disorder prediction 27 47 - -
Lan13g0362 306 MobiDBLite consensus disorder prediction 87 119 - -
Lan13g0362 306 ProSitePatterns Zinc finger Dof-type signature. 45 81 IPR003851 GO:0003677|GO:0006355
Lan13g0362 306 MobiDBLite consensus disorder prediction 94 119 - -
Lan13g0362 306 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 10 305 IPR045174 GO:0003700|GO:0006355
Lan13g0362 306 ProSiteProfiles Plant heme peroxidase family profile. 1 204 IPR002016 GO:0004601|GO:0006979|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan13g0362 Lan-Chr13 2422755 2424488 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan13g0362 11 306 C2C2-Dof Transcription Factor Family AT2G28510 42.727 2.39e-57 184
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lan13g0362 zf-Dof 2.1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan13g0362 - - lang:109353359 534.258
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan7g0274 7 1758975 1760701 Lan13g0362 13 2422755 2424488 LSH
Lan8g1688 8 23767509 23769193 Lan13g0362 13 2422755 2424488 LSH
Lan10g0120 10 740918 743400 Lan13g0362 13 2422755 2424488 PCT
Lan3g0073 3 496569 497382 Lan13g0362 13 2422755 2424488 PCT
Lan13g0362 13 2422755 2424488 Lan10g0120 10 740918 743400 PCT
Lan13g0362 13 2422755 2424488 Lan3g0073 3 496569 497382 PCT