Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g1220 ATGCATGAAATACATTCCATGGGAGGAGACAGGAGTTTCAGACCACACCACCACCACCACCACCACCACCACCAGGCCTTGAAGTGTCCCCGCTGCGACTCTATTAACACTAAGTTCTGTTACTACAACAACTACCATCTCTCCCAGCCACGTCACTTCTGCAAAACCTGCCGCCGTTATTGGACTAAAGGCGGCGTCCTCCGCAACGTCCCCGTTGGCGGTGGTTGCCGCAAATCCAAACCCTCCAACAACAATTCCTCTTCTGAAACTGAAACCACCACTGCAGCAACAGAGCACAATTCCAATTCTCATTCCAGCAGTGAAAGTTCCAGCCTCACACTCGCCACCGAAGCGGTTTCAGCGCCAAAAACTTTCAACTCTGATTCCAATAATAACAACGACTCGAAGTCCTTTACCCCTTTCTCAAATCCTGCTTTCGAGACAGGTGCACTTGAACATCAACAACAACAAGGAACAGAGGATTGTGCTATTTTCTCTGAGATTGGAAGCTTCACAAGATCAATCACTTCCACCAACGATACATTGCAGTTTGGATTCGGTGTTACAACTATCCCCGATGCGGGGTTATTGATGTCCATGGATGGTGGTGATGATGTGGAATTGAAGTTTCCGGATAATCTCAACGGTGGTGGTGCTTCGTTGCTTGAACAGGGTACCATACCCGTTGATTTGACTGGCCTTCAAAACAAAACAGGGCACGGAGGATTTGGACCGTTGGATTGGCATGGCGATGGAGATCAAGGTTTGTTTGATCTTTCTAACACCGTTGATTATGCTGACTGGACTCATCAAACCACTCACTGGTGTGATCACGACAATTCTTCTCCTTTTCATCTTCCCTGA 864 0.478 MHEIHSMGGDRSFRPHHHHHHHHHQALKCPRCDSINTKFCYYNNYHLSQPRHFCKTCRRYWTKGGVLRNVPVGGGCRKSKPSNNNSSSETETTTAATEHNSNSHSSSESSSLTLATEAVSAPKTFNSDSNNNNDSKSFTPFSNPAFETGALEHQQQQGTEDCAIFSEIGSFTRSITSTNDTLQFGFGVTTIPDAGLLMSMDGGDDVELKFPDNLNGGGASLLEQGTIPVDLTGLQNKTGHGGFGPLDWHGDGDQGLFDLSNTVDYADWTHQTTHWCDHDNSSPFHLP* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g1220 287 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 13 169 IPR045174 GO:0003700|GO:0006355
Lan12g1220 287 MobiDBLite consensus disorder prediction 71 145 - -
Lan12g1220 287 ProSitePatterns Zinc finger Dof-type signature. 29 65 IPR003851 GO:0003677|GO:0006355
Lan12g1220 287 Pfam Dof domain, zinc finger 25 80 IPR003851 GO:0003677|GO:0006355
Lan12g1220 287 ProSiteProfiles Zinc finger Dof-type profile. 27 81 IPR003851 GO:0003677|GO:0006355
Lan12g1220 287 MobiDBLite consensus disorder prediction 78 145 - -
Lan12g1220 287 PANTHER DOF ZINC FINGER PROTEIN 4 13 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g1220 Lan-Chr12 18234856 18236288 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g1220 10 287 C2C2-Dof Transcription Factor Family AT5G60850 40.678 7.19e-50 165
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lan12g1220 zf-Dof 9.3e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g1220 - - gmx:100800458 270.011
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g1220 12 18234856 18236288 Lan1g1074 1 20886275 20887803 LSH
Lan12g1220 12 18234856 18236288 Lan1g0147 1 1085569 1087094 LSH