Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0347 ATGGGTTTGGTTAAATTAGCTGCAATCATATTCACAGTGATAGCTGTTCTGTGCTCATCAACACAGGCTCAACCAGAAGCCAAGTTCAAGTGTTCAACAACAGATGTCACGTGTCATTCACTGATTGACTACAAGAACCCCAACGGCACCACCCTGCGCCACATCCAAACACTCTTCAACGTTAAACACCTCCAAGACATCCTCGGCGCTAACAACTTACCCACCAACACCACAGGTAACTATAGTGTGAGTCCAAACGAGGCAATCAAGGTTCCCTTCCCGTGCAAGTGCAACAATGGCACGGGTCTATCGAACCATGTTCCGGTCTACACTATCAAAGCCGGTGATGGTTTATACGACATAGCAACCACCACTTTTGCAGGCTTGGTCAAGTTCCCTCAGATCCAGGAGGTTAATAATATACCGGATGAGAATAAGATAATAGTTGGGGATAAGTTGTGGATCCCTTTGCCATGTAGCTGTGATGAGGTGGGTGGGGAGAGTGTGGTGCATTATGGGCACCTTGTGGAGTCAGGGAATAGTGTTGAAGGGATTGCTGACAAGTATGGCACTACACAACAAGTACTTCTAACTCTCAATGGCATTTCTGACCCCAAGACCCTTCAGGCTGGTCAAGTTCTTGATGTTCCCCTCAAAGCTTGTTCTTCAAATGTGAGAAATGACTCATTGGATTTTCCTTTGCTTGTTGCAAATGCTACTTACATCTATACTGCTAATAACTGCGTCAAGTGCAAGTGTGATTCCAGCAACAACAATATATTACAATGTGAGCCATCATCACAATTCAAACCAACAAAATGGTCCATTTGCCCCTCTACGCAATGTTCGAGCAACTTATTCATTGGCAACATTACGTCTTCAGATTCCTGCAATAGCACAACCTGTGACTATGCTGGTTATACCTCGAAAAACATCTCTACAGTTCTTGCAACTCACTCCACTTGTGCTGCAGTTTTACCAGTAGCACCAAGTGGTTCAGATCCAGGGTCAGGAGCATCAAGGAGCAGCACCTTGCGAGTTTGGGTTTGGAGTAACCTTTTCATTGTCATTCACTTCATCCTCTTTTCTGTATATCTTTTTTAG 1104 0.4457 MGLVKLAAIIFTVIAVLCSSTQAQPEAKFKCSTTDVTCHSLIDYKNPNGTTLRHIQTLFNVKHLQDILGANNLPTNTTGNYSVSPNEAIKVPFPCKCNNGTGLSNHVPVYTIKAGDGLYDIATTTFAGLVKFPQIQEVNNIPDENKIIVGDKLWIPLPCSCDEVGGESVVHYGHLVESGNSVEGIADKYGTTQQVLLTLNGISDPKTLQAGQVLDVPLKACSSNVRNDSLDFPLLVANATYIYTANNCVKCKCDSSNNNILQCEPSSQFKPTKWSICPSTQCSSNLFIGNITSSDSCNSTTCDYAGYTSKNISTVLATHSTCAAVLPVAPSGSDPGSGASRSSTLRVWVWSNLFIVIHFILFSVYLF* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0347 367 CDD LysM 174 216 IPR018392 -
Lan12g0347 367 Pfam LysM domain 110 156 IPR018392 -
Lan12g0347 367 Pfam LysM domain 175 217 IPR018392 -
Lan12g0347 367 ProSiteProfiles LysM domain profile. 172 216 IPR018392 -
Lan12g0347 367 Gene3D LysM domain 163 229 IPR036779 -
Lan12g0347 367 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 14 322 - -
Lan12g0347 367 CDD LysM 109 155 IPR018392 -
Lan12g0347 367 SUPERFAMILY LysM domain 173 217 IPR036779 -
Lan12g0347 367 Gene3D LysM domain 108 162 IPR036779 -
Lan12g0347 367 ProSiteProfiles LysM domain profile. 108 155 IPR018392 -
Lan12g0347 367 PANTHER LYSM DOMAIN-CONTAINING GPI-ANCHORED PROTEIN 2 14 322 - -
Lan12g0347 367 SUPERFAMILY LysM domain 109 157 IPR036779 -
Lan12g0347 367 SMART LysM_2 109 156 IPR018392 -
Lan12g0347 367 SMART LysM_2 173 217 IPR018392 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0347 Lan-Chr12 8334463 8338044 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0347 11 344 LysM Receptor-like Protein (LYPs) Gene Family AT2G17120 47.801 3.09e-100 299
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0347 - - lang:109351135 580.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0347 12 8334463 8338044 Lan1g0819 1 18973065 18977199 LSH