Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan12g0271 ATGGAACAGTATGAGAAGGTGGAGAAGATCGGTGAAGGAACCTATGGTGTGGTTTACAAGGCTCGTGATCGCGTCACCAATGCGACTTTTGCGTTGAAGAAGATTCGGCTGGAGCAAGAAGATGAGGGAGTTCCCAGCACTGCCATTAGAGAGATTTCACTCTTGAAAGAAATGCAGCATAGGAACATTGTTAGGTTGCAGGACGTAGTGCATAGTGAGAGGCGATTGTATCTGGTTTTTGAGTACCTTGATTTAGATCTAAAGAAGCACATGGATTCATGTCCAGAATTTGGAAAAGATCATCAGCAAGTGAAAATGTTCCTTTATCAAATTCTCTGTGGCATTGCCTACTGTCATTCACACAGAGTTCTTCATCGAGATTTGAAACCACAGAATTTGTTGATAGATCGCAGCAATAATGCACTAAAGCTTGCAGATTTTGGATTGGCTAGGGCATTTGGAATTCCTGTCAAGACATTTACACATGAGGTGGTAACACTGTGGTACCGAGCTCCAGAAATATTGCTTGGATCTCGTCATTATTCTACCCCAGTCGATGTTTGGTCCGTGGGATGTATATTCGCTGAGATGATAAACCAACGACCCCTTTTCCCTGGGGACTCTGAGATTGATGAATTGTTCAAAATATTCAGAATCATGGGTACACCAAATGAAGAAACATGGCCAGGAGTGACTTCATTGCCTGATTTTAAATCAGCCTTTCCCAAGTGGTCAGCTAAGGACCTAGCAACTCTGGTTCCAAATCTTGAGCCAGCTGGTCTTGATCTTCTCAAAAGTATGCTGTGTTTGGATCCTAGCAAAAGAATCACTGCAAGGAGTGCTCTTGAACATGAGTACTTCAAAGACATTAAAATTTTACCTTGA 885 0.4237 MEQYEKVEKIGEGTYGVVYKARDRVTNATFALKKIRLEQEDEGVPSTAIREISLLKEMQHRNIVRLQDVVHSERRLYLVFEYLDLDLKKHMDSCPEFGKDHQQVKMFLYQILCGIAYCHSHRVLHRDLKPQNLLIDRSNNALKLADFGLARAFGIPVKTFTHEVVTLWYRAPEILLGSRHYSTPVDVWSVGCIFAEMINQRPLFPGDSEIDELFKIFRIMGTPNEETWPGVTSLPDFKSAFPKWSAKDLATLVPNLEPAGLDLLKSMLCLDPSKRITARSALEHEYFKDIKILP* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan12g0271 294 CDD STKc_CDK1_CdkB_like 4 287 - -
Lan12g0271 294 SUPERFAMILY Protein kinase-like (PK-like) 1 290 IPR011009 -
Lan12g0271 294 ProSitePatterns Protein kinases ATP-binding region signature. 10 33 IPR017441 GO:0005524
Lan12g0271 294 ProSiteProfiles Protein kinase domain profile. 4 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g0271 294 Gene3D Phosphorylase Kinase; domain 1 1 84 - -
Lan12g0271 294 PANTHER CELL DIVISION PROTEIN KINASE 1 291 - -
Lan12g0271 294 SMART serkin_6 4 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g0271 294 Pfam Protein kinase domain 4 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lan12g0271 294 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672|GO:0006468
Lan12g0271 294 Gene3D Transferase(Phosphotransferase) domain 1 86 292 - -
Lan12g0271 294 PANTHER CYCLIN-DEPENDENT KINASE A-2 1 291 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan12g0271 Lan-Chr12 6441692 6451761 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan12g0271 1 294 Core Cell Cycle Gene Families AT3G48750 83.333 0.0 520
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CDK-Pl Lan12g0271 Pkinase 6.8e-81 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan12g0271 K02206 - gmx:100127418 551.592
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan12g0271 12 6441692 6451761 Lan1g0791 1 18564518 18572572 LSH