Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0809 ATGGAGGAGAAGAAGTTTGTGTGCAAATATTGCAGCAAGAGGTTCCCTTGTGGTAAATCACTGGGTGGCCACATCAGGACACATATGAATGAACATTCAGCTCAAGCAAATAAAGAGAGAAGCAATGCTGCTATGCTCAAGTTTGAGGCTATGAGAAAGAAGAAGAGGGATTCATTAGGGTATGGTGATGGTGATGGTGATGCTGGGAACCCCACTTATGGCCTCAGAGAGAACCCTAAGAAAACAATGAGGTTTGTGCATTCCAATACCAATAAGAATGTGCAGCAGCAACTTGGTAAGTTCTGCAAAGAATGTGGGAAAGGTTTCTCATCATTGAAAGCTCTTTGTGGTCACATGGCTTGTCACTCAGAGAAAGAGAAGCAGAAATTGGTTATGGATAGTCAATCTGATACTGAGACCAATTCTGCTCCAAGGAGATCTAAGAGAATGAGGTTCAACAATATTATCAGCAGCAGCAACAACAACAATAACAACAATTATCTTTCTTATTCTATGGCCAATGGATCTTCTTCTGTGTCAGAAGTTGAACAGGAACAGGAAGAGGTTGCTAGGTGTTTGATGATGTTGTCAAAAGACTCTAGTTACCATCATAGTGGTCGTTTTGCTTTGTTTGCTGAGTCTTCTGATAACAACTCTGTTATTCTAGAGGCAAAATCACCTTCTCTTGAGACAAAGTTCACTATAAAAAATGGTAAGAAGTCTGTGTCTAATGCTTATGAATTTGCTGAGAGGAGGCTGCGAAACGACTCGAAATTGAAGTCTAGTGAGTTTGGTTATCACTCTGATAATTCAGATTCCGGGTACTTCAGATACGGGCCGAAAAAGGTAGACTCAGCTGATTCAAATGATGGGGTTTTCAGGAGTGAAGTTAAGTCTTCTAAAGTGAGAGACATGGCTGGGTTTGATGATTGTGATGTTGAACTAAGCAAGGTGCTGAGTAGAGGAAGAAGCAGAAACACTGAATTTAAGAAATTAGTGTTGGAGGACTTGGATAATGTTAGAGAACATGGAGATACAAAGAGATTTGCTTCAAAGAAGAGTCTTATCTATGACTCTCTTGGTTCAAAGAAGGTTGCAAATGATTTTAATGATGAAATATATAAGAGGAATGGATGGAAGTATGAGTCCTTGAACACTGAAAGGGACAATGGATATGAAGATGATTCAGCATATGAGAGTGATGAGAACAGCTCTGACAGTGATTCTTATCCTGCTGCAAAGCCACACAACAACAAGAACCTCAATGGGAAGAAGTTAAGCAAGGGAAAGAAGAAGCTGAAGCTGAAGTCAAAGAAAAGCAAGGAACACCAGTGTCCAATTTGCAACAGAATTTTCAGTTCAGGTCAAGCATTGGGGGGTCACAAAAGGTCCCATTTTGTTGGAGGTTCTGAAGAAAACACTCTTGTGATTAGGCCAGCTAGTGCTACTCCAGTTCCTTGCCTAATTGATCTCAATCTACCTGCTCCTGTTGATGAATAG 1500 0.4053 MEEKKFVCKYCSKRFPCGKSLGGHIRTHMNEHSAQANKERSNAAMLKFEAMRKKKRDSLGYGDGDGDAGNPTYGLRENPKKTMRFVHSNTNKNVQQQLGKFCKECGKGFSSLKALCGHMACHSEKEKQKLVMDSQSDTETNSAPRRSKRMRFNNIISSSNNNNNNNYLSYSMANGSSSVSEVEQEQEEVARCLMMLSKDSSYHHSGRFALFAESSDNNSVILEAKSPSLETKFTIKNGKKSVSNAYEFAERRLRNDSKLKSSEFGYHSDNSDSGYFRYGPKKVDSADSNDGVFRSEVKSSKVRDMAGFDDCDVELSKVLSRGRSRNTEFKKLVLEDLDNVREHGDTKRFASKKSLIYDSLGSKKVANDFNDEIYKRNGWKYESLNTERDNGYEDDSAYESDENSSDSDSYPAAKPHNNKNLNGKKLSKGKKKLKLKSKKSKEHQCPICNRIFSSGQALGGHKRSHFVGGSEENTLVIRPASATPVPCLIDLNLPAPVDE* 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0809 499 MobiDBLite consensus disorder prediction 421 439 - -
Lan11g0809 499 ProSitePatterns Zinc finger C2H2 type domain signature. 445 465 IPR013087 -
Lan11g0809 499 ProSiteProfiles Zinc finger C2H2 type domain profile. 100 127 IPR013087 -
Lan11g0809 499 ProSitePatterns Zinc finger C2H2 type domain signature. 102 122 IPR013087 -
Lan11g0809 499 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 499 - -
Lan11g0809 499 ProSiteProfiles Zinc finger C2H2 type domain profile. 443 465 IPR013087 -
Lan11g0809 499 SMART c2h2final6 443 465 IPR013087 -
Lan11g0809 499 SMART c2h2final6 6 28 IPR013087 -
Lan11g0809 499 SMART c2h2final6 100 122 IPR013087 -
Lan11g0809 499 MobiDBLite consensus disorder prediction 390 441 - -
Lan11g0809 499 ProSiteProfiles Zinc finger C2H2 type domain profile. 6 33 IPR013087 -
Lan11g0809 499 MobiDBLite consensus disorder prediction 403 420 - -
Lan11g0809 499 Pfam C2H2-type zinc finger 102 124 - -
Lan11g0809 499 Pfam C2H2-type zinc finger 443 465 - -
Lan11g0809 499 Pfam C2H2-type zinc finger 6 29 - -
Lan11g0809 499 ProSitePatterns Zinc finger C2H2 type domain signature. 8 28 IPR013087 -
Lan11g0809 499 Gene3D Classic Zinc Finger 1 60 - -
Lan11g0809 499 SUPERFAMILY beta-beta-alpha zinc fingers 101 465 IPR036236 -
Lan11g0809 499 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 499 - -
Lan11g0809 499 SUPERFAMILY beta-beta-alpha zinc fingers 2 33 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0809 Lan-Chr11 7634422 7636908 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lan11g0809 zf-C2H2_6 8.4e-07 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0809 11 7634422 7636908 Lan11g0809 11 7634422 7636908 ECH