Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0777 ATGGGAAGGGGTAGGGTACAGTTGAAGCGTATAGAGAACAATATCAACCGTCAAGTTACTTTCTCTAAAAGGAGAGCTGGGTTACTCAAGAAAGCAAATGAGATCTCTGTGCTCTGTGATGCTGAGGTTGCTTTGATTGTTTTCTCCCACAAAGGAAAGCTCTTTGAATATGCCACTGATTCATGCATGGAGAAGATACTGGAACGCCATGAAAGGTATGCCTATGCAGAGAGACAGCTTGTGGCAAATGATTCTGAGACACTGGGAAACTGGACCATTGAATATAGTAGACTCAAGGCAAAGATTGAGCTTTTGCAGACAAACCACAGGCATTATATGGGAGAAGATTTAGGATCAATGAGCCTCAAAGAGCTTCAGAGTCTAGAGCAGCAGTTAGATACTGCTCTCAAAACAATTCGTACACGCAGAAACCAACTCATGTACGAGTCCATTTCTGAGCTTCAGAAAAAGGAGAAAGTGATTCAGGAGCAGAATAACATGCTTGCAAAGAAGATCAAGGACAAAGAGAAGGCTAACACTGCTCAACAAGCTGGACCATGGGATCAACCAAACTATAGAGTTGATCCATCTTTCTTGATACAGCAACCTCATCCCACTTTGAACATTGGTGGTAATCACCGTGAGGAAGCAGCACCGGAAGTAGGAAGGAACGACCTTGACCTGAGCCTGGAACCATTTTATTCCTGCTACCTTGGATGCTTTTGA 726 0.4353 MGRGRVQLKRIENNINRQVTFSKRRAGLLKKANEISVLCDAEVALIVFSHKGKLFEYATDSCMEKILERHERYAYAERQLVANDSETLGNWTIEYSRLKAKIELLQTNHRHYMGEDLGSMSLKELQSLEQQLDTALKTIRTRRNQLMYESISELQKKEKVIQEQNNMLAKKIKDKEKANTAQQAGPWDQPNYRVDPSFLIQQPHPTLNIGGNHREEAAPEVGRNDLDLSLEPFYSCYLGCF* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0777 241 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Lan11g0777 241 Coils Coil 151 174 - -
Lan11g0777 241 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Lan11g0777 241 ProSiteProfiles K-box domain profile. 88 178 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan11g0777 241 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Lan11g0777 241 PANTHER MADS BOX PROTEIN 1 221 - -
Lan11g0777 241 Pfam K-box region 88 172 IPR002487 GO:0003700|GO:0005634|GO:0006355
Lan11g0777 241 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Lan11g0777 241 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Lan11g0777 241 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Lan11g0777 241 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Lan11g0777 241 SUPERFAMILY SRF-like 2 91 IPR036879 GO:0003677|GO:0046983
Lan11g0777 241 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Lan11g0777 241 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Lan11g0777 241 PANTHER FLORAL HOMEOTIC PROTEIN APETALA 1 1 221 - -
Lan11g0777 241 Coils Coil 125 145 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0777 Lan-Chr11 7189101 7194155 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Lan11g0777 K-box 1.3e-29 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0777 11 7189101 7194155 Lan11g0777 11 7189101 7194155 ECH
Lan11g0777 11 7189101 7194155 Lan2g0710 2 14347360 14354241 LSH