Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan11g0688 ATGCCTTTATCAAGTGACAACTTTTTGCAGACCTTTACTCAATCTGAAAATCAACCAAATCATGTGCCACTGATTCCTTCATCAACCTTCAGATATGGTCACGAAGAACTAGAGACTATGGTTGTATCAGAAAGCTTAGGGGATTCTTCTCCTCCATATACTGCAACTAGTTGTGCTGAAAAGAACAAGAATCTCGTTGGAAACAAAAGGAAGAGAAACAATAATGAAGTTATTCATGTAAGAGCAAAACGAGGCCAAGCAGCTGATAGCCACAGTTTAGCAGAAAGAGTGAGAAGAGAGAAAATCAATGAGAAGCTGAGACACTTGCAGGACCTGGTTCCAGGGTGCTATAAGGCAATGGGAATGGCAGTTATGTTAGATGTGATAATAAATTATATTCATTCACTACAGCAGCAAATTGAGTTTCTATCCATGAAGCTTTCAGCAGCAAGCATGTATTTTGATTTCAACACTTCAGATATGGGTGCTACAAAAACCATGCAGCAGAGAAATGCTAGTACACATGAAATCCAAGAGATGGAAACTATAGCAGGAGAAGGTTATGGTGGGTTCTGCTATTTCAACCCAACATGGCCACTTTATTGA 606 0.3944 MPLSSDNFLQTFTQSENQPNHVPLIPSSTFRYGHEELETMVVSESLGDSSPPYTATSCAEKNKNLVGNKRKRNNNEVIHVRAKRGQAADSHSLAERVRREKINEKLRHLQDLVPGCYKAMGMAVMLDVIINYIHSLQQQIEFLSMKLSAASMYFDFNTSDMGATKTMQQRNASTHEIQEMETIAGEGYGGFCYFNPTWPLY* 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan11g0688 201 Gene3D - 81 145 IPR036638 GO:0046983
Lan11g0688 201 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 86 136 IPR011598 GO:0046983
Lan11g0688 201 Pfam Helix-loop-helix DNA-binding domain 90 137 IPR011598 GO:0046983
Lan11g0688 201 CDD bHLH_AtBPE_like 76 161 - -
Lan11g0688 201 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 56 186 IPR024097 GO:0006355
Lan11g0688 201 SMART finulus 92 142 IPR011598 GO:0046983
Lan11g0688 201 PANTHER TRANSCRIPTION FACTOR BHLH75 56 186 - -
Lan11g0688 201 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 84 155 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan11g0688 Lan-Chr11 5796417 5797891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan11g0688 76 189 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G25330 69.298 4.72e-49 157
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lan11g0688 HLH 3.3e-06 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan11g0688 11 5796417 5797891 Lan11g0688 11 5796417 5797891 ECH