Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0610 ATGCAACAATCCAACGCCTCTGATTCTCCCTCACAACAACAACAGCAGCAGCAGCCACAGTCGGAGCAGCAGAACCACCAACAACGGCAACCGCAACCGCCTCCGCCTGTTGCGGTGGCGCCACAGCAGTGGGTGCCGATGCAGTACCCGGCTATGGTAATGCCGCACCACATGTTGCCGCCTCAGCCTTATGCGCCGCCGCCACCTTACGTGCCTTACCATCACCAGTACCAGCACGTGCCGCACGTGACTACTCACCAGAATCATCATGGATCCAATGGCGGTGAGAATAAGACTATATGGGTCGGCGATTTGTATCACTGGATGGATGAAAGCTATCTCCATCGATGTTTTGCTTCCACTGGCGAGATTTCCTCCATCAAGGTTATTCGCAATAAACATACTTGTCTATCTGAGGGTTATGGATTTGTGGAATTTTATTCACATGCCACCGCTGAGAAAGTTTTACAGACTTATGGTGGAATTTTGATGCCCAATACAGAGCAACCTTTCCGCCTGAACTGGGCAACATTTAGCACGGGAGACAAGGGTTCAGATAATGTTCCTGATCTTTCCATTTTTGTAGGAGATTTAGCTTCAGATGTTACAGATAGTGTATTGCATGAAACATTTTCCACTAAATATCCTTCTGTTAAAGCTGCAAAAGTTGTTTTTGATGTCAATACTGGCCGTTCAAAGGGCTATGGTTTCGTTAGGTTTGGAGACGATAATGAGAGGTCCCAGGCTATGACTGAAATGAATGGTGTTTACTGTTCTAGCAGGCCTATGCGAATTGGTGCTGCAACTCCCAGAAAATCATCTGGCTATCAACAAGGAGGCCAGTCAAATGGCGCATCCAACCAATCAGAAGCGGATTCTACGAACACAACTATATTCGTTGGAGGACTCGACCCTAATGTTACAGATGAAGATCTTAGGCACTCATTCTCCCAGTATGGTGAGATAGTCTCTGTTAAGATACCTGTCGGAAAGGGGTGTGGTTTTGTTCAATTTGCTAACAGAAATAATGCTGAAGAAGCCTTGCAGAAGCTAAATGGTACAATGATCGGCAAGCAAACAGTTCGCCTTTCTTGGGGCCGCAATCCAGCTAATAAGCAGTTTAGGATGGATTTCGGCAGCCCCTGGAATGGAGCATATTACGGGGGCTCTGTTTATGATGGTTATGGATATGCTTTGCCGCCTCCTCACGACCCAAGAATATACGCCGCTGCTTATGGGGCTTACCCTGTTTATGGAGGCCACCAACAGCAAGTAAGCTAA 1281 0.4723 MQQSNASDSPSQQQQQQQPQSEQQNHQQRQPQPPPPVAVAPQQWVPMQYPAMVMPHHMLPPQPYAPPPPYVPYHHQYQHVPHVTTHQNHHGSNGGENKTIWVGDLYHWMDESYLHRCFASTGEISSIKVIRNKHTCLSEGYGFVEFYSHATAEKVLQTYGGILMPNTEQPFRLNWATFSTGDKGSDNVPDLSIFVGDLASDVTDSVLHETFSTKYPSVKAAKVVFDVNTGRSKGYGFVRFGDDNERSQAMTEMNGVYCSSRPMRIGAATPRKSSGYQQGGQSNGASNQSEADSTNTTIFVGGLDPNVTDEDLRHSFSQYGEIVSVKIPVGKGCGFVQFANRNNAEEALQKLNGTMIGKQTVRLSWGRNPANKQFRMDFGSPWNGAYYGGSVYDGYGYALPPPHDPRIYAAAYGAYPVYGGHQQQVS* 427
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0610 426 MobiDBLite consensus disorder prediction 1 40 - -
Lan10g0610 426 Gene3D - 97 177 IPR012677 -
Lan10g0610 426 Gene3D - 179 289 IPR012677 -
Lan10g0610 426 Gene3D - 290 398 IPR012677 -
Lan10g0610 426 SMART rrm1_1 192 266 IPR000504 GO:0003723
Lan10g0610 426 SMART rrm1_1 99 174 IPR000504 GO:0003723
Lan10g0610 426 SMART rrm1_1 297 364 IPR000504 GO:0003723
Lan10g0610 426 MobiDBLite consensus disorder prediction 1 28 - -
Lan10g0610 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 100 167 IPR000504 GO:0003723
Lan10g0610 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 298 361 IPR000504 GO:0003723
Lan10g0610 426 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 193 262 IPR000504 GO:0003723
Lan10g0610 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 296 368 IPR000504 GO:0003723
Lan10g0610 426 MobiDBLite consensus disorder prediction 271 297 - -
Lan10g0610 426 CDD RRM3_NGR1_NAM8_like 295 366 - -
Lan10g0610 426 SUPERFAMILY RNA-binding domain, RBD 65 179 IPR035979 GO:0003676
Lan10g0610 426 PANTHER POLYADENYLATE-BINDING PROTEIN RBP47C-RELATED 36 425 - -
Lan10g0610 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 191 270 IPR000504 GO:0003723
Lan10g0610 426 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 98 178 IPR000504 GO:0003723
Lan10g0610 426 SUPERFAMILY RNA-binding domain, RBD 190 369 IPR035979 GO:0003676
Lan10g0610 426 MobiDBLite consensus disorder prediction 267 297 - -
Lan10g0610 426 CDD RRM2_SECp43_like 190 269 - -
Lan10g0610 426 CDD RRM1_SECp43_like 99 179 - -
Lan10g0610 426 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 36 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0610 Lan-Chr10 5430586 5434342 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0610 99 394 Eukaryotic Initiation Factors Gene Family AT2G23350 27.213 1.70e-22 98.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0610 10 5430586 5434342 Lan5g0408 5 8874678 8878280 LSH
Lan10g0610 10 5430586 5434342 Lan3g1226 3 24442201 24445862 LSH
Lan10g0610 10 5430586 5434342 Lan3g1226 3 24442201 24445862 PCT
Lan3g1226 3 24442201 24445862 Lan10g0610 10 5430586 5434342 PCT