Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0604 ATGAGAGGAAAAGGCGACGAAAATTCTAGATTGTGGGTAGAAGACATTTACTGGACCCATTTCAAAGCCCTTCATTTTGCACAATTTCTTCGTACTGGTTATGATCAACACCTTGTACTTCCCAAAACATTTTCAGATAATGTAAAGAAGTTGCCTGAAAATGTGGACCTTAGAGGTCCTAGTGGTGTTGTGTGGAATGTAGGACTGACAAGTAAAGATGATACAGTGTTTTTCACGAATGGCTGGCGACAATTTTTTAGAGATCACTCTTTGAAAGAGAATGATTTCCTGGTCTTCAAGTACAATGGTGAGTCACTGTTTGATGTTTTAATATTTGATGGAGGGAGCTTCTGTGAGAAGGCAAGTTCTTATTTTGTTCGTAAGTGTGGGTATACTGAAAATGGAGGTGCCTGCTTGATCACTGGAGAAGTGGCAGATAATTCTGTCCAAAAAGTTAATGCTCCTTCTAACGCTGGAGTTCAATTTGCTTCACCTGAGAAATCTGTGGATGGTAACGATCTCATGGTGTTTGAAGCTGTACCCTTCAAAACTCCTACTGAAAGGACTTTTAATGCTGGTGTCGAATCTGCCTCCCCCGAGCAGTTTATGGAAGCTGATGGAGTTGCAGAAGCCGCAGCTGTTTCCCCCCAAACTACTGGTAAAAGGACCAGGAAGCAACTTTATGCTGTTAAACCCATCCGGTCTGTGCGCAGAGGAAGAGCAGCAAATGTTCCGAGTGCTAATCAGGAAGTAGTTGACTTGGTGACTGATCCTAAACCTGCTTCTGGGAGTAAAAGTCGAACACGTGACATATCTTATACCTCAAATAGAAGGCCTGTCACAGAAGATGAGATAAAAAATGCACTCGAGTTGGCCAAGGCAGCATGTACCTCCGGCAGCTTGCACATAGTTATGCGACCAACACATGTATATAAGAGATTCTATGTGTCAATCCCTAATAAGTGGATATTTGAACATATGCCTCAGAAATCTCAAAATGTGATATTACGTGTTGGTGGGACTGAATGGCTTGCCAAATACAGCCTCCATAATATCCGTCTCACTGGTGGTCTTACTGGTGGGTGGAAACATTTCGCATTGGATAATAATCTGGAAGAGTTTGATGTGTGTGTGCTTGAACCAGCAGGCCAAATCAACAACGCATTGATCCTGGATGTGAGCATTTTCAGAGTTGTTCAGGAGATTACTCCACTGGGTATGGTAGGAACCCCAGGGATAAGGGGTAGGAAAAAGTAA 1257 0.428 MRGKGDENSRLWVEDIYWTHFKALHFAQFLRTGYDQHLVLPKTFSDNVKKLPENVDLRGPSGVVWNVGLTSKDDTVFFTNGWRQFFRDHSLKENDFLVFKYNGESLFDVLIFDGGSFCEKASSYFVRKCGYTENGGACLITGEVADNSVQKVNAPSNAGVQFASPEKSVDGNDLMVFEAVPFKTPTERTFNAGVESASPEQFMEADGVAEAAAVSPQTTGKRTRKQLYAVKPIRSVRRGRAANVPSANQEVVDLVTDPKPASGSKSRTRDISYTSNRRPVTEDEIKNALELAKAACTSGSLHIVMRPTHVYKRFYVSIPNKWIFEHMPQKSQNVILRVGGTEWLAKYSLHNIRLTGGLTGGWKHFALDNNLEEFDVCVLEPAGQINNALILDVSIFRVVQEITPLGMVGTPGIRGRKK* 419
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0604 418 MobiDBLite consensus disorder prediction 256 279 - -
Lan10g0604 418 CDD B3_DNA 38 113 IPR003340 GO:0003677
Lan10g0604 418 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 8 140 - -
Lan10g0604 418 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 267 404 - -
Lan10g0604 418 SUPERFAMILY DNA-binding pseudobarrel domain 24 113 IPR015300 -
Lan10g0604 418 SUPERFAMILY DNA-binding pseudobarrel domain 302 383 IPR015300 -
Lan10g0604 418 Pfam B3 DNA binding domain 304 384 IPR003340 GO:0003677
Lan10g0604 418 Pfam B3 DNA binding domain 36 112 IPR003340 GO:0003677
Lan10g0604 418 ProSiteProfiles B3 DNA-binding domain profile. 23 115 IPR003340 GO:0003677
Lan10g0604 418 ProSiteProfiles B3 DNA-binding domain profile. 301 399 IPR003340 GO:0003677
Lan10g0604 418 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 267 404 IPR044837 -
Lan10g0604 418 PANTHER B3 DOMAIN-CONTAINING PROTEIN OS11G0197600-RELATED 8 140 IPR044837 -
Lan10g0604 418 CDD B3_DNA 304 397 IPR003340 GO:0003677
Lan10g0604 418 Gene3D - 279 401 IPR015300 -
Lan10g0604 418 Gene3D - 19 118 IPR015300 -
Lan10g0604 418 MobiDBLite consensus disorder prediction 261 275 - -
Lan10g0604 418 SMART B3_2 26 115 IPR003340 GO:0003677
Lan10g0604 418 SMART B3_2 301 399 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0604 Lan-Chr10 5332638 5336144 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Lan10g0604 B3 6.4e-10 CL0405
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0604 10 5332638 5336144 Lan5g0412 5 8968038 8975320 LSH