Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0603 ATGTTCACTAATTCTCACCAAGTTCTGAGAACCTTAGCTCCTTTGCAAGAACCAGACCTCTCCTTAAACATAAGCCCACCCTTTATTTCAGAATCTGAACACAAAGTGGGAAGCTTCAATAAAACCCTTTACAATGATATGTGCTCAACTTCTGACTCAGGTAGTAGTGGAAGTGAACTAAGCCATGAAAATAATAATAATAATGACTTTTTTCACCTTGGTCATCATCATGGTGAACCCACTTTGAGCTTAGGCTTGGAAACCAAAGGTTTGAATCCCCATGTACCAATACAACAAGGAGTCTTAAGAAACTTCAATCACCACAACTTCCAACCTCAAATCTATGTTCGCGATTTCAAACGAAATGCAAGAATTGTTCATGGTGTTAAAAGGAGTGTTAGAGCTCCTAGGATGAGATGGACAACCACCCTCCATGCTCATTTTGTTCATGCGGTTCAGCTACTTGGTGGTCATGAAAGGGCAACTCCAAAGTCTGTTTTAGAGTTAATGAATGTTAAGGATCTAACCCTAGCACACGTCAAGAGTCACTTGCAGATGTATAGAACAGTGAAGAGCACTGTCAAAGGCACAGGTCCTGGACAGATCACAGATATGGGCTTAAGCACAAGGCCAGAGATTACCAATAATCTGCATAATGAAGTTTCAGCTTGTGATGAGAGAAGAACCAATTTATCACACCCGTTGAGGTCACCGTGGCAATCATCATCAATGGAGACAAATACAAACAATACTAGACAAAAACCTGAAATTGGTTTAATGTATTCTCATCTCAAGGGAAATGAAACCATGGTTAATGTGCAAAATTATGGATGCCAGTCAAATTTCATGAAGGAGAGATTGGATTCTAGCCCTTTGTCACGTTCTGAAGCGATTCTTAACTTAGAATTCACCCTTGGAAGGTCCAATTGTGAAGCTGAGCATGCTGAATCGTCAAGAGAGTTAACTCTTCTCAAGTGTTAA 981 0.4016 MFTNSHQVLRTLAPLQEPDLSLNISPPFISESEHKVGSFNKTLYNDMCSTSDSGSSGSELSHENNNNNDFFHLGHHHGEPTLSLGLETKGLNPHVPIQQGVLRNFNHHNFQPQIYVRDFKRNARIVHGVKRSVRAPRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKSTVKGTGPGQITDMGLSTRPEITNNLHNEVSACDERRTNLSHPLRSPWQSSSMETNTNNTRQKPEIGLMYSHLKGNETMVNVQNYGCQSNFMKERLDSSPLSRSEAILNLEFTLGRSNCEAEHAESSRELTLLKC* 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0603 326 Gene3D - 135 192 - -
Lan10g0603 326 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 136 189 IPR006447 GO:0003677
Lan10g0603 326 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 1 326 IPR044847 GO:0000976|GO:0006355|GO:0010158
Lan10g0603 326 MobiDBLite consensus disorder prediction 231 253 - -
Lan10g0603 326 SUPERFAMILY Homeodomain-like 133 190 IPR009057 -
Lan10g0603 326 MobiDBLite consensus disorder prediction 50 74 - -
Lan10g0603 326 MobiDBLite consensus disorder prediction 50 68 - -
Lan10g0603 326 Pfam Myb-like DNA-binding domain 137 188 IPR001005 -
Lan10g0603 326 MobiDBLite consensus disorder prediction 233 253 - -
Lan10g0603 326 PANTHER MYB-LIKE DNA-BINDING DOMAIN, SHAQKYF CLASS PROTEIN 1 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0603 Lan-Chr10 5313277 5316900 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Lan10g0603 Myb_DNA-binding 1.4e-05 CL0123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0603 10 5313277 5316900 Lan5g0413 5 9009047 9013509 LSH
Lan10g0603 10 5313277 5316900 Lan3g1239 3 24529567 24531548 LSH
Lan10g0603 10 5313277 5316900 Lan15g1172 15 20324820 20328634 PCT
Lan10g0603 10 5313277 5316900 Lan3g1239 3 24529567 24531548 PCT
Lan15g1172 15 20324820 20328634 Lan10g0603 10 5313277 5316900 PCT
Lan3g1239 3 24529567 24531548 Lan10g0603 10 5313277 5316900 PCT