Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0601 ATGGAAACCAACACCATTCCACGTCCCCAATTCATGAACTCTGAGCCTCCAAGAATGTCAACAACTGAAGCATTTAGCGACGAAGAATACCGTAACAGCAGTGCCCAATCACCAATGAGCCCATACTTCTACGACCCTACTCGCATGAGTAGCGAGGGCTCACCCATGATGATGTCACCATGGAACCAAACAACTAATTCACCTTTCTCAAAGCCACAATGGTCTCAGAATTACGATGAAGCCGCTCGACAAAATGCTCTCATAGGTTCCCTTGTTCGTGAAGAGGGACATATTTATTCATTAGCAGCCACTGGTGATCTTTTATACACAGGTTCAGATTCGAAGAATATCAGGGTTTGGAAGAATCTGCATGAGTTTTGCGGATTCAAAGCAAATAGTGGTTTGGTTAAAGCGATTATAATCTCTGGTCAGAAAATATTTACCGGTCACCAAGACGGTAAAATCCGAGTCTGGAAAGTTTCACCAAAAAACCCTAGCGTTCACAAGCGTGCAGGAACATTGCCAACGTTGAAAGACATCTTCAAGAGTTCAATCAAACCTAGTAACTATGTTGAAGTCCGAAAACACCGTACTGCACTCTGGATTAAACACTCCGACGCTGTTTCATGCTTGAGTCTCTCAAACGACAAAGCTTATCTCTATTCAGCTTCATGGGACAGAACAATTAAGGTTTGGAGAATTTCTGATTCTAAATGCTTGGAATCAATTGCGGCTCATGACGACGCCGTAAACTCTGTCGTTTGCGGCATAGAAGGGTTTGTTTTCTCTGGTTCAGCTGACGGAACCGTTAAGGTTTGGAAAAGGGAGCAGCGTGGGAAAGGAACAAAGCATGAGGCAGTTCAAACGCTTCTTAAGCAAGAATGTGCTGTAACGGCGTTAGCGGTTAACACAACCGGTTCGATTGTGTATTGTGGGTCCAGTGATGGGTTGGTTAATTTTTGGGAACTTGAGAAGCAATTTGCGCATGGTGGGGTCCTTAAGGGTCATAAGCTTGCGGTTCTTTGTCTCGCTGCGGCTGGTACTTTGGTTTTTAGTGGCTCTGCTGATAAGACTATATGTGTGTGGAAAAGGGATGGGGTAATTCACACGTGCATGTCTGTGCTGACTGGGCACGACGGTCCGGTGAAGTGTCTGGCGGTGGAGGAGGATAGAGAGGCGGCGGCGAGGGGTGATCCGCGGTGGGTTGTGTATAGTGGGAGTTTGGATAAGTCAGTAAAAGTGTGGAGTGTTTCTGAAGCGAATAATCAGATGCCGCAACACCACATGGTTTCTGATGGGGATTCATTTCCACCTTCTGAATCTGATGGGAGTTATTCTTCTTCTGGTCGACCCAATCATGAGAGGAGGAATTGA 1374 0.4585 METNTIPRPQFMNSEPPRMSTTEAFSDEEYRNSSAQSPMSPYFYDPTRMSSEGSPMMMSPWNQTTNSPFSKPQWSQNYDEAARQNALIGSLVREEGHIYSLAATGDLLYTGSDSKNIRVWKNLHEFCGFKANSGLVKAIIISGQKIFTGHQDGKIRVWKVSPKNPSVHKRAGTLPTLKDIFKSSIKPSNYVEVRKHRTALWIKHSDAVSCLSLSNDKAYLYSASWDRTIKVWRISDSKCLESIAAHDDAVNSVVCGIEGFVFSGSADGTVKVWKREQRGKGTKHEAVQTLLKQECAVTALAVNTTGSIVYCGSSDGLVNFWELEKQFAHGGVLKGHKLAVLCLAAAGTLVFSGSADKTICVWKRDGVIHTCMSVLTGHDGPVKCLAVEEDREAAARGDPRWVVYSGSLDKSVKVWSVSEANNQMPQHHMVSDGDSFPPSESDGSYSSSGRPNHERRN* 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0601 457 SMART WD40_4 326 363 IPR001680 GO:0005515
Lan10g0601 457 SMART WD40_4 194 233 IPR001680 GO:0005515
Lan10g0601 457 SMART WD40_4 283 322 IPR001680 GO:0005515
Lan10g0601 457 SMART WD40_4 236 274 IPR001680 GO:0005515
Lan10g0601 457 SMART WD40_4 84 121 IPR001680 GO:0005515
Lan10g0601 457 SMART WD40_4 122 159 IPR001680 GO:0005515
Lan10g0601 457 SMART WD40_4 368 416 IPR001680 GO:0005515
Lan10g0601 457 PANTHER F-BOX AND WD40 DOMAIN PROTEIN 13 432 IPR045182 -
Lan10g0601 457 MobiDBLite consensus disorder prediction 423 457 - -
Lan10g0601 457 Pfam WD domain, G-beta repeat 370 416 IPR001680 GO:0005515
Lan10g0601 457 Pfam WD domain, G-beta repeat 204 232 IPR001680 GO:0005515
Lan10g0601 457 Pfam WD domain, G-beta repeat 238 274 IPR001680 GO:0005515
Lan10g0601 457 Pfam WD domain, G-beta repeat 95 121 IPR001680 GO:0005515
Lan10g0601 457 Pfam WD domain, G-beta repeat 295 321 IPR001680 GO:0005515
Lan10g0601 457 Pfam WD domain, G-beta repeat 331 363 IPR001680 GO:0005515
Lan10g0601 457 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 201 238 - -
Lan10g0601 457 CDD WD40 95 416 - -
Lan10g0601 457 ProSiteProfiles Trp-Asp (WD) repeats profile. 243 274 IPR001680 GO:0005515
Lan10g0601 457 Gene3D - 283 454 IPR015943 GO:0005515
Lan10g0601 457 MobiDBLite consensus disorder prediction 1 46 - -
Lan10g0601 457 ProSiteProfiles Trp-Asp (WD) repeats profile. 333 363 IPR001680 GO:0005515
Lan10g0601 457 ProSiteProfiles Trp-Asp (WD) repeats profile. 290 324 IPR001680 GO:0005515
Lan10g0601 457 ProSiteProfiles Trp-Asp (WD) repeats profile. 201 242 IPR001680 GO:0005515
Lan10g0601 457 Gene3D - 192 282 IPR015943 GO:0005515
Lan10g0601 457 Gene3D - 51 191 IPR015943 GO:0005515
Lan10g0601 457 PRINTS G protein beta WD-40 repeat signature 220 234 IPR020472 -
Lan10g0601 457 PRINTS G protein beta WD-40 repeat signature 261 275 IPR020472 -
Lan10g0601 457 PRINTS G protein beta WD-40 repeat signature 403 417 IPR020472 -
Lan10g0601 457 MobiDBLite consensus disorder prediction 1 44 - -
Lan10g0601 457 PANTHER PROTEIN JINGUBANG 13 432 - -
Lan10g0601 457 SUPERFAMILY WD40 repeat-like 91 421 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0601 Lan-Chr10 5271059 5273048 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan3g0801 3 14928504 14933897 Lan10g0601 10 5271059 5273048 PCT