Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0568 ATGATGCCATTTAGGACTATTGTTTATGAGCTTAAGGATATTGGAGAAGGCATTGGAAACATGTATAGAAAAGGTGCAGAATCCAAGCATATGCACTGGCATGGAAAATCTCACATTGCTCCTGAATGTTCCTTACCACCACCACCCTCGCCATCGTCATTTTCAACCGTAGTGAGTGAGCAAAGTAGGTGGGCTAACTTACCACCTGAGTTGTTACTAGACATAGTTCAAAGGGTAGAAGCCAGTGAAACTTCCTGGCCTGCTAGGAGAGTAGTTGTAGCATGTGCCTCAGTTTGTAGGTCATGGAGGGAGATAACATACAGTGTTGTTAAGACACCAGAACAGTGTAGTTGGCTCACTTTCCCTATATCACTGAAGCAGCCTGGTCCAAGAGATGCTCCAATCCAGTGTTTTATTAAGAGAGAAAGGGTGACTTCAACATATCGTTTATATCTCGGTCTGAGCCCAGCGCTTACTTGTGATATGAGCAAACTGCTATTGGCAGCAAAGAAGATTAGAAGGGCAACATGCACAGAATTTTTATTATCGTTAGTTCCCGATGATTTCTCTCGAGATAGCAATACTTACATTGGAAAACTAAGGTCTAATTTTCTGGGAACCAAGTTCACAATCATGGATGGTGAGCCCCCTCATGATTCTGCAGTTCCATTAAATTGTAAGTTGCAGCAAAGAGACCATTTGAAGCCATTACTTCCAAGAGTTGCTGCTGCTAACTATAATGTGGGCACGATATCTTATGAACTCAATGTTCTTCGTACAAGAGGTCCAAGAAGAATGTGTTGTACAATGCACTTGATCCCCATATCTGCAATCCAAGAAGGAGGGACTGCCCCTACTCCTTCGAAGTTTACCAATTGCTATAACGAGCATGCGTCTACCACGCCTATTTCGAAAGGAAAGAAGCCAAGAGTTGAATTTGGTTCAGCTGGCACCGATGATAGTCCAGGATCAACCCCAAGCGCAAGGGAACCACTGATTTTGAAAAACAAAGCTCCTAGATGGCATGAACAGCTGCAATGTTGGTGCTTGAATTTCAAGGGACGGGTTACAGTGGCCTCGGTGAAGAACTTCCAGCTTGTAGCAGCTGCAGAACCTTCCCAAAATGTAGCAGTGGCAGAACAAGAGAAAGTGATACTACAATTTGGAAAAATTGGGAAAGACATATTCACCATGGATTATCGATATCCCCTTTCTGCTTTTCAAGCCTTCGCAATCTGCTTGAGCAGCTTTGACACAAAACCAGCTTGTGAATGA 1275 0.4345 MMPFRTIVYELKDIGEGIGNMYRKGAESKHMHWHGKSHIAPECSLPPPPSPSSFSTVVSEQSRWANLPPELLLDIVQRVEASETSWPARRVVVACASVCRSWREITYSVVKTPEQCSWLTFPISLKQPGPRDAPIQCFIKRERVTSTYRLYLGLSPALTCDMSKLLLAAKKIRRATCTEFLLSLVPDDFSRDSNTYIGKLRSNFLGTKFTIMDGEPPHDSAVPLNCKLQQRDHLKPLLPRVAAANYNVGTISYELNVLRTRGPRRMCCTMHLIPISAIQEGGTAPTPSKFTNCYNEHASTTPISKGKKPRVEFGSAGTDDSPGSTPSAREPLILKNKAPRWHEQLQCWCLNFKGRVTVASVKNFQLVAAAEPSQNVAVAEQEKVILQFGKIGKDIFTMDYRYPLSAFQAFAICLSSFDTKPACE* 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0568 424 ProSitePatterns Tub family signature 1. 352 365 IPR018066 -
Lan10g0568 424 Pfam F-box domain 64 108 IPR001810 GO:0005515
Lan10g0568 424 SUPERFAMILY F-box domain 52 108 IPR036047 GO:0005515
Lan10g0568 424 MobiDBLite consensus disorder prediction 299 330 - -
Lan10g0568 424 PANTHER TUBBY-RELATED 2 424 - -
Lan10g0568 424 PANTHER TUBBY-LIKE F-BOX PROTEIN 2 424 - -
Lan10g0568 424 SUPERFAMILY Tubby C-terminal domain-like 113 424 IPR025659 -
Lan10g0568 424 Pfam Tub family 125 419 IPR000007 -
Lan10g0568 424 PRINTS Tubby superfamily signature 180 196 IPR000007 -
Lan10g0568 424 PRINTS Tubby superfamily signature 196 220 IPR000007 -
Lan10g0568 424 PRINTS Tubby superfamily signature 245 272 IPR000007 -
Lan10g0568 424 PRINTS Tubby superfamily signature 334 351 IPR000007 -
Lan10g0568 424 PRINTS Tubby superfamily signature 352 368 IPR000007 -
Lan10g0568 424 PRINTS Tubby superfamily signature 381 400 IPR000007 -
Lan10g0568 424 PRINTS Tubby superfamily signature 402 424 IPR000007 -
Lan10g0568 424 ProSitePatterns Tub family signature 2. 409 424 IPR018066 -
Lan10g0568 424 Gene3D - 58 112 - -
Lan10g0568 424 Gene3D Tubby Protein; Chain A 122 424 IPR025659 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0568 Lan-Chr10 4742914 4746367 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TUB Lan10g0568 Tub 6.7e-103 CL0395
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0568 10 4742914 4746367 Lan3g0480 3 4419965 4422740 LSH