Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0545 ATGGGTCGTCACACACTCTTATCTCTCCTCCTCTTCGCCGCCGTAGCAACCGCCGCAACCTCCGTTCAAATCACCGACAACGATGACCTCTTGATCCGTCAAGTGATCGACGCGGATGACTTGCTTAACGCGGAGCACCACTTCACCAACTTCAAATCCAAGTTTAGTAAAACCTACGCAACGGAAGAAGAGCATAACTATCGTTTCGGTGTTTTCAAGTCTAACTTGCGCAGAGCCAACAAGCATGCGAAACTCGACCCTTCCGCTGTTCACGGTGTCACTAAATTCTCCGATCTTACTCCGAAGGAGTTCCGCCGCCAGTTCCTTGGACTTAATCGCCGTCTCCGATTACCGGTTGATGCTCATAAGGCTCCGATTCTACCTACAAACAACCTTCCTGGTGATTTTGACTGGCGTGATAAGGGAGCTGTCACTGGCGTCAAGGACCAGGGCTCGTGTGGTTCATGCTGGTCATTTAGTACCACAGGTGCCTTGGAAGGAGCTAACTTTCTTGCAACAGGCAAGCTAGAGACCCTTAGCGAGCAGCAGCTTGTGGATTGTGATCATCTGTGTGATCCTGAAGAAGGTGGAGCATGTGACGCAGGTTGTAATGGTGGGTTGATGAACACTGCATTCGAGTACATACTTCAATCTGGGGGAGTACAACTCGAAAAGGACTATCCTTACACCGGACAGGATGGCAAATGCAAATTTGACAAAAGCAAAGTTGTTGCTTCAGTATCTAATTTCAGTGTGATTTCCCTTGATGAGGACCAAATTGCTGCAAATCTAGTGCAAAATGGCCCTCTTTCAGTTGCAATCAATGCTGCTTATATGCAAACATATATAGGTGGTGTCTCATGCCCATATATCTGTGGGAAGCATCAGGATCATGGTGTTCTTTTGGTGGGTTATGGCGCAGGCGAATATGCTCCCATTAGGTTGAAGAAGAAGCCCTTCTGGATCCTAAAGAATTCATGGGGGGAGAACTGGGGAGAGAATGGTTACTACAAGATCTGCAGGGTTCGGAATATATGTGGAGTAGATTCCATGGTCTCAACTGTAGCTGCTGCTATAAGTACATCCAACAATTAA 1095 0.474 MGRHTLLSLLLFAAVATAATSVQITDNDDLLIRQVIDADDLLNAEHHFTNFKSKFSKTYATEEEHNYRFGVFKSNLRRANKHAKLDPSAVHGVTKFSDLTPKEFRRQFLGLNRRLRLPVDAHKAPILPTNNLPGDFDWRDKGAVTGVKDQGSCGSCWSFSTTGALEGANFLATGKLETLSEQQLVDCDHLCDPEEGGACDAGCNGGLMNTAFEYILQSGGVQLEKDYPYTGQDGKCKFDKSKVVASVSNFSVISLDEDQIAANLVQNGPLSVAINAAYMQTYIGGVSCPYICGKHQDHGVLLVGYGAGEYAPIRLKKKPFWILKNSWGENWGENGYYKICRVRNICGVDSMVSTVAAAISTSNN* 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0545 364 Pfam Cathepsin propeptide inhibitor domain (I29) 48 104 IPR013201 -
Lan10g0545 364 Gene3D Cysteine proteinases 20 356 - -
Lan10g0545 364 PANTHER CYSTEINE PROTEASE FAMILY C1-RELATED 30 357 - -
Lan10g0545 364 SMART Inhibitor_I29_2 48 104 IPR013201 -
Lan10g0545 364 SUPERFAMILY Cysteine proteinases 45 355 IPR038765 -
Lan10g0545 364 ProSitePatterns Eukaryotic thiol (cysteine) proteases asparagine active site. 320 339 IPR025661 -
Lan10g0545 364 PRINTS Papain cysteine protease (C1) family signature 150 165 IPR000668 GO:0006508|GO:0008234
Lan10g0545 364 PRINTS Papain cysteine protease (C1) family signature 298 308 IPR000668 GO:0006508|GO:0008234
Lan10g0545 364 PRINTS Papain cysteine protease (C1) family signature 320 326 IPR000668 GO:0006508|GO:0008234
Lan10g0545 364 PANTHER CYSTEINE PROTEASE RD19C-RELATED 30 357 - -
Lan10g0545 364 ProSitePatterns Eukaryotic thiol (cysteine) proteases cysteine active site. 150 161 IPR000169 -
Lan10g0545 364 CDD Peptidase_C1A 133 355 IPR039417 -
Lan10g0545 364 Pfam Papain family cysteine protease 132 354 IPR000668 GO:0006508|GO:0008234
Lan10g0545 364 SMART pept_c1 132 356 IPR000668 GO:0006508|GO:0008234
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0545 Lan-Chr10 4471656 4474517 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0545 10 4471656 4474517 Lan5g0442 5 9670198 9673499 LSH
Lan10g0545 10 4471656 4474517 Lan15g1199 15 20470598 20472840 PCT
Lan15g1199 15 20470598 20472840 Lan10g0545 10 4471656 4474517 PCT