Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0444 ATGCCTTTTGTCACAGAACACATGAAGTGGAGAAAACACAGAAACAGGTTGAGCCACGCCATTTCAGAAACTGATCCAAACCCACAAGTATCTTCCATAATCCAATCCACACGTTGCAAATCCACCATTTCCTCTCTCCTCCTCTCTACTTTCTCCAACAACACCTCCAATGAAACCAAACATAAGAAGAAAAAGAGTAACAACAACAACAACAACAACAAAAATAGCAACTTTTCTGCAACAACCTTGAGGGGCCTTGGTTGCAAGGCCAGTGCATCAAAGCATGTGTCAGTTCCTGCAGTGATTAGATCCTCAGCTGATTGGCAAGAGAAGAAGAAGAAGAAGAGTAGAAAGAAGAAGCAGAGAAGAAACAGCGACAAGAACAGTAGCAATGGTTCTTCTTCTTCTTCTGCTGCTGCTACATGTGTGGATTTTCAGGATGTTTGGTGTGGCCCTGGAATTGGATTCTCAGTTGATGCTACTGTTGCCTCCTCTGTGGATAGGAAAACTGTGTTTTCAAGAGGGAATCTTGATGTGGAGATAATTACACAAAGGGAGCGTCCATCTTTTTTGGGAAGGAACACTGTAAACACAGAAAGCATATCAGTTCTGGATGATTATTCTGACATATTTACACCTCACCCTGATTTAGAGTCTTTTGCCACTTCTAGATACTATCGTCATGTTCCACATCCTTCCTCTTATGGTCTTTCTGAGATAATGATACTTCAAAGAAGACTCTTAATGGGGGAACGTTACAATTCACTTGACCAATTTGGAGACTGGAGACTTGATATTGATAACATGTCCTATGAACAATTACTTGAGCTGGGTGAGAAAATTGGTTATGTGAACACTGGACTTAAAGAAGATGAGATGGTACTCAACATAAAGAGAATTAAGCTTGCAATTTCAAATGGTGCATCAAAGAATCAAATAGACAAAAAGTGCACCATTTGTCAGGAGGAATATGAAGGGGGTGAAGAGCTGGGGAGGCTAAACTGTGAACACAGCTATCACTTTCAGTGTATAAAACAATGGCTTGTGCATAAAAACTTCTGCCCAGTATGCAAGCAAGAAGTCGTGGTTCGACACATGCCTAAGTCCTAA 1110 0.4099 MPFVTEHMKWRKHRNRLSHAISETDPNPQVSSIIQSTRCKSTISSLLLSTFSNNTSNETKHKKKKSNNNNNNNKNSNFSATTLRGLGCKASASKHVSVPAVIRSSADWQEKKKKKSRKKKQRRNSDKNSSNGSSSSSAAATCVDFQDVWCGPGIGFSVDATVASSVDRKTVFSRGNLDVEIITQRERPSFLGRNTVNTESISVLDDYSDIFTPHPDLESFATSRYYRHVPHPSSYGLSEIMILQRRLLMGERYNSLDQFGDWRLDIDNMSYEQLLELGEKIGYVNTGLKEDEMVLNIKRIKLAISNGASKNQIDKKCTICQEEYEGGEELGRLNCEHSYHFQCIKQWLVHKNFCPVCKQEVVVRHMPKS* 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0444 369 SMART ring_2 317 357 IPR001841 -
Lan10g0444 369 MobiDBLite consensus disorder prediction 103 137 - -
Lan10g0444 369 PANTHER C3HC4-TYPE RING ZINC FINGER PROTEIN 4 365 - -
Lan10g0444 369 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 4 365 IPR045191 GO:0061630
Lan10g0444 369 Pfam Ring finger domain 316 358 IPR001841 -
Lan10g0444 369 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 284 363 IPR013083 -
Lan10g0444 369 MobiDBLite consensus disorder prediction 53 80 - -
Lan10g0444 369 ProSiteProfiles Zinc finger RING-type profile. 317 358 IPR001841 -
Lan10g0444 369 SUPERFAMILY RING/U-box 316 364 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0444 Lan-Chr10 3190238 3194915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0444 4 272 C3H Transcription Factor Family AT1G73760 35.294 7.12e-39 138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0444 10 3190238 3194915 Lan3g0503 3 4721224 4726543 LSH