Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lan10g0120 ATGGACCCTTCTAGTGGACAAAACCAGGAAATTATGTCTAGCCAGTCACTTGAGAACATGTTACTGAGCTCAAACTCACATGAAGAGAGGAAGCCAAGACCTGAACCAGAAGAAGCACTGAAGTGCCCAAGATGTGACTCCACCAACACCAAGTTTTGTTACTACAACAATTACAGTCTTTCTCAGCCAAGATACTTCTGCAAATCCTGTAGGAGATATTGGACCAAAGGAGGAACACTAAGGAATGTTCCAGTTGGTGGAGGATGTAGAAAAGCAAAAAGGTACTCCTCATCACCATCATCATTATCATCAAAGAGAGTTCAAGATCAAACATTCACACACAATGATCCAAACCCACTCAATAGTTTTCCTCATTTGACTTATGATTCTAGTGACCATCTCTTACTAGCATTAACTAGGCTCCAAAAACAATCATGTGGGGGGCAATTAGGTTTTGATGACCATGATCTTTCAATTTTGGGGAACCCTACAAACTCACTTCATAACATTCTTGGCAATCAATGCATGAACTCTTCAACAACAAATCATGGGTTATTGGGTGCACTTAGAAGTGGGTTTCTTGGAGCACAAAACAATAATGGTCACAATATGTATTATGTATATGGAAATGGGAACATGGGGGAGGTAGATAATGGTATTGTTGGAGAAAGGATACTACATTATGATCAAGAAATGAGTAATGTAGCACCTCAAGCAGTGAATGACAGTATCATGAAGCAAGAACAAAGTGAAAGTAGGGTTTTGAGGGGTTTCCCATGGCAGATCAATGGAGACACAAACATGGTTGAAGTTGATTCCGGAAGAGCAAGTTGGAATGGTTTTACACCATCTTGGCATGGCCTTCTACATAGTCCCCTAATGTAG 885 0.4045 MDPSSGQNQEIMSSQSLENMLLSSNSHEERKPRPEPEEALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKAKRYSSSPSSLSSKRVQDQTFTHNDPNPLNSFPHLTYDSSDHLLLALTRLQKQSCGGQLGFDDHDLSILGNPTNSLHNILGNQCMNSSTTNHGLLGALRSGFLGAQNNNGHNMYYVYGNGNMGEVDNGIVGERILHYDQEMSNVAPQAVNDSIMKQEQSESRVLRGFPWQINGDTNMVEVDSGRASWNGFTPSWHGLLHSPLM* 295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lan10g0120 294 PANTHER DOF ZINC FINGER PROTEIN DOF3.2-LIKE 9 293 - -
Lan10g0120 294 MobiDBLite consensus disorder prediction 1 41 - -
Lan10g0120 294 Pfam Dof domain, zinc finger 38 94 IPR003851 GO:0003677|GO:0006355
Lan10g0120 294 ProSitePatterns Zinc finger Dof-type signature. 42 78 IPR003851 GO:0003677|GO:0006355
Lan10g0120 294 MobiDBLite consensus disorder prediction 24 41 - -
Lan10g0120 294 ProSiteProfiles Zinc finger Dof-type profile. 40 94 IPR003851 GO:0003677|GO:0006355
Lan10g0120 294 MobiDBLite consensus disorder prediction 1 23 - -
Lan10g0120 294 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 9 293 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lan10g0120 Lan-Chr10 740918 743400 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lan10g0120 1 294 C2C2-Dof Transcription Factor Family AT2G28510 41.745 5.35e-54 176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lan10g0120 zf-Dof 1e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lan10g0120 - - gmx:100799737 377.096
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lan10g0120 10 740918 743400 Lan3g0073 3 496569 497382 LSH
Lan10g0120 10 740918 743400 Lan7g0274 7 1758975 1760701 PCT
Lan10g0120 10 740918 743400 Lan8g1688 8 23767509 23769193 PCT
Lan10g0120 10 740918 743400 Lan13g0362 13 2422755 2424488 PCT
Lan7g0274 7 1758975 1760701 Lan10g0120 10 740918 743400 PCT
Lan8g1688 8 23767509 23769193 Lan10g0120 10 740918 743400 PCT
Lan13g0362 13 2422755 2424488 Lan10g0120 10 740918 743400 PCT