Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0679 ATGGGAAAGAATAGTAATAAAATGAAGGAAAATGGGAAAGAACACTCCAACTTAACCATTTTCGTCTCTAACTTGCCTTACTCATTTTCCAACACTCAGTTGGAGGAGACGTTTAGTGAAGTTGGACCTGTCAGGCGTTGCTTCATGGTTACACAAAAGGGGTCTGCTCAGCATCGTGGTTTTGGTTATGTTCAATTATGTGACCGATCCTTTACATCTATTAGAATTTGTGACTTGGATTTTTCTAGTTTAGAACTAATTGCTGCCATCTTTAGTGCTGTTGAGGAAGATGCTATCCGTGCTATTGAGCTGAAGAATGGTTCATCTGTTGGGGGTCGGAAAATTGCAGTGAAGCATGCAATGCCTCGTCCTACTCGTGAGGAACGGCAATCAAAACCAAACCAAGTGGGTAAGACAGATGACAACACAGAGTCAAAAAATGATGATAAAGATGGCACACCTTCTGAAGCGGATAAACATGTTTCAGTTTCGAAGGAAGACGTACAAGTTTCAAATAAGCAAAGAACCTCAAAGAAGCCCATTGAAGTGAGAAAAGCAAATCTCTGCAATGATATACCAGATGAGGGGGGTTGCTCAGAAAAGCAGAGGGTTGCTAGAACTATTATATTTGGTGGTCTCAAGAATTCTGATATGGCTGAAGATGTTCACCGCCAAGCCAAAGAGATTGGCACTGTATGTTCTATTAAGTATCCACTTCCAAGGAAGGATCTTGATCATGATAAGATTTTTACATTTGTTTTTTACTTTCTGCAAAGTGATGTCAAGGATGGTAGACATAATATTGGAATATTTCCAGGTCTCCTGCAAGATGGCTGTGTTTTGGAGGCTTCTGCTGTACTTTATACCAGTGTAAAATTAGCCCGAGCTGCTGTTGCATCATTACATAAAAAGGAGATAGGTGGGGGAACTGTTTGGGCAAGACAACTGGGTGGAGAGGGCTCCAAGACTCAGAAGTGGAAGCTTATTGTCAGAAACCTTCCTTTCAAGGCCAGAGAAGATGAAATAAGAGATATATTTGCATCTGCAGGGTATGTGTGGGATGTATTTATTCCACGCAAATCAGACACGGGTCTGTCTAAGGGTTTTGCATTTGTAAAATTCACGTGCAAGCAAGATGCAGAAAATGTAAGAACTACTACTAAGGCCATTCAAAAGCTCAACGGATTTACATTTTCAAAACGGCTCATAGCAGTTGACTGGGCTGTTCCAAAAAAGATATTTAACAGTGATGCTAATGCTGCTCTTGCTTCAGAAGAAGCGAATGCATATTTGCTTGGGTATATTACTTTTTTACTAGGAGGTAGCATTGAAATAGAGTCCAAGTATTTTCCAATTCTCTTCCTAACACAAATCAACTGGAGTTTGGTTGCTGAGTTGTTGCAAAATTACCTTATTTCTTGTGTGACAGCTGATATCTATCTAACATTTGAAGTATCGGATCATTGTGTGTTATGCTACACACGACAACAAAAGGTGAACGATGAAGATGGTAGTGCTACTGAGAGTGATGGAGATGACAGTGATATAGATTCTTCTAGTGCCATGGAAGAGGATGGTGCTCCTTCTGAAATTAATTTTGAAAAGGAAGCAGGCATTGCAAGGAAGGTTCTTAATAACTTGATTACATCCTCCACCAAAGGAACATCAGTAAATAATGATTCTGTGTTGGGAGGAAACGAGGAGCCAAAATCCAATGAAATTGTTAAGGATGCAGATAATAAATCATCTGGTGAGACTGAAAAGGTTTCAGATGTTTCTAAGCCTGAAATCTCTGACAAAAGCAAGTTACAAATTCCCAAGCAAGCAGAAGAAGCTGATTTGCAGAGAACAATTTTCATAAATAATCTTCCTTTTGAATGTGACAATGAAGAAGTGAAGCAACGATTTTCTGGATTTGGGGAAGTGGAATACTTTGCCCCGGTTCTCCACCAAGTGACCAAGCGACCAAGAGGAACTGGTTTTCTCAAGTTTAAAACCGTAGAAGCAGCTGATGCTGCAATTTCTGCAGCCAGTGCTGCTTCCGGCGTGGGCATTCTACTGAAAGGTAGACCATTAAAAGTTTTGAAGGCTTTGGATAAAAAATCGGCTCAGGACAAGGAAGTGGAGAAAGCTAAAAATGAGGTTCAAGACCACCGGAATCTTTACTTAGCAAAGGAGGGACTCATTCTTGAGGGAACGCCAGCTGCTGAAGGGGTTTCATCCAGTGATATGTTAAAACGCCAAGATTTGGAAAAGAAGAAGAAAACAAAGCTTCAGTCACCAAATTTCCATGTTTCAACAACTCGGCTTATCATCTACAACTTGCCCAAGACGATGACTGAAAAACAACTGAAGAAGCTTTGCATTGATGCAGTCAAATCTAAAGCTACCAAGCAGAAACCTTTCATTCGCCAGATAAAGTTCTTGAAAGATGGAAGGAAAGGTAATGCTGTTCCAGAACGCTACTCACGTGGAGTTGCATTTGTTGAATTTTCAGAGCACCAGCATGCCCTTGTGGCTCTGAGAGTTCTTAACAACAATCCTGAAACTTTCAACCCTGAACATCGGCCAATTGTGGAGTTTGCACTTGATAATGTTCAAACTTTGAAACTTCGAAAGGAAAAGCTACAATATCAGCAGCAAGCTCTTGATGTTGACAATGATGGCAAGGAAAATGGTGAACCAGGCAAAGAACTAGATCACATGCATACCAAGGACAGAAAACGAAAATATCAAGAGCATGGCAAATCAGCAGGGAAGGAGTCAGCAGTGAATACAAACAGTGAACCAGGTGGTACAGTGGCAAGTGAAAAATCTCCTGAAGGAAATAAATTCAAAAGCCAGAAAGGCAACCATAAGAATAAAAGTGCTGAAGAGTCTTCACTGAAACAAAATTCAGATGCCTTGTCCAGGAAGCCAAGGAACGAAAAGGGTGGCCAGAATCATGGTAATACATCACATGAAGCTCAAAACACTACCATTGACGCCAATAGAATAAAGGCAGGAAACAAAGTTGATGTTGGATTTAGAAAAAGGAAGATGCAAAACCAAGAAGACGCAGTGCAAGATGTTTCCAGAAAACGGACTAAAAAGAAGAAAGCTCCGGTAGGTAAAGAAGCAGTAGATAAGCTTGACATGCTTATAGAACAATATAGATCCAAGTTCTCACATAAAGGTTCTCAAGGGAATGATGGTGACAAAAAACCTTCCAAACAGCTTAGGAAATGGTTTGAATCATAG 3240 0.404 MGKNSNKMKENGKEHSNLTIFVSNLPYSFSNTQLEETFSEVGPVRRCFMVTQKGSAQHRGFGYVQLCDRSFTSIRICDLDFSSLELIAAIFSAVEEDAIRAIELKNGSSVGGRKIAVKHAMPRPTREERQSKPNQVGKTDDNTESKNDDKDGTPSEADKHVSVSKEDVQVSNKQRTSKKPIEVRKANLCNDIPDEGGCSEKQRVARTIIFGGLKNSDMAEDVHRQAKEIGTVCSIKYPLPRKDLDHDKIFTFVFYFLQSDVKDGRHNIGIFPGLLQDGCVLEASAVLYTSVKLARAAVASLHKKEIGGGTVWARQLGGEGSKTQKWKLIVRNLPFKAREDEIRDIFASAGYVWDVFIPRKSDTGLSKGFAFVKFTCKQDAENVRTTTKAIQKLNGFTFSKRLIAVDWAVPKKIFNSDANAALASEEANAYLLGYITFLLGGSIEIESKYFPILFLTQINWSLVAELLQNYLISCVTADIYLTFEVSDHCVLCYTRQQKVNDEDGSATESDGDDSDIDSSSAMEEDGAPSEINFEKEAGIARKVLNNLITSSTKGTSVNNDSVLGGNEEPKSNEIVKDADNKSSGETEKVSDVSKPEISDKSKLQIPKQAEEADLQRTIFINNLPFECDNEEVKQRFSGFGEVEYFAPVLHQVTKRPRGTGFLKFKTVEAADAAISAASAASGVGILLKGRPLKVLKALDKKSAQDKEVEKAKNEVQDHRNLYLAKEGLILEGTPAAEGVSSSDMLKRQDLEKKKKTKLQSPNFHVSTTRLIIYNLPKTMTEKQLKKLCIDAVKSKATKQKPFIRQIKFLKDGRKGNAVPERYSRGVAFVEFSEHQHALVALRVLNNNPETFNPEHRPIVEFALDNVQTLKLRKEKLQYQQQALDVDNDGKENGEPGKELDHMHTKDRKRKYQEHGKSAGKESAVNTNSEPGGTVASEKSPEGNKFKSQKGNHKNKSAEESSLKQNSDALSRKPRNEKGGQNHGNTSHEAQNTTIDANRIKAGNKVDVGFRKRKMQNQEDAVQDVSRKRTKKKKAPVGKEAVDKLDMLIEQYRSKFSHKGSQGNDGDKKPSKQLRKWFES 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0679 1079 CDD RRM3_RBM28_like 616 697 - -
Lal9g0679 1079 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 616 699 IPR000504 GO:0003723
Lal9g0679 1079 SUPERFAMILY RNA-binding domain, RBD 322 412 IPR035979 GO:0003676
Lal9g0679 1079 MobiDBLite consensus disorder prediction 113 179 - -
Lal9g0679 1079 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 9 611 - -
Lal9g0679 1079 PANTHER RNA-BINDING MOTIF PROTEIN, Y CHROMOSOME, FAMILY 1 MEMBER C-RELATED 617 877 - -
Lal9g0679 1079 Gene3D - 2 157 IPR012677 -
Lal9g0679 1079 Gene3D - 315 419 IPR012677 -
Lal9g0679 1079 MobiDBLite consensus disorder prediction 506 520 - -
Lal9g0679 1079 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 326 410 IPR000504 GO:0003723
Lal9g0679 1079 MobiDBLite consensus disorder prediction 979 998 - -
Lal9g0679 1079 MobiDBLite consensus disorder prediction 1004 1026 - -
Lal9g0679 1079 Coils Coil 859 879 - -
Lal9g0679 1079 Coils Coil 694 721 - -
Lal9g0679 1079 SUPERFAMILY RNA-binding domain, RBD 616 846 IPR035979 GO:0003676
Lal9g0679 1079 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 122 IPR000504 GO:0003723
Lal9g0679 1079 MobiDBLite consensus disorder prediction 570 606 - -
Lal9g0679 1079 MobiDBLite consensus disorder prediction 501 530 - -
Lal9g0679 1079 MobiDBLite consensus disorder prediction 1059 1079 - -
Lal9g0679 1079 CDD RRM2_RBM28_like 327 409 - -
Lal9g0679 1079 CDD RRM4_RBM28_like 768 865 - -
Lal9g0679 1079 PANTHER RNA BINDING PROTEIN 9 611 - -
Lal9g0679 1079 PANTHER RNA BINDING PROTEIN 617 877 - -
Lal9g0679 1079 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 768 881 IPR000504 GO:0003723
Lal9g0679 1079 MobiDBLite consensus disorder prediction 919 934 - -
Lal9g0679 1079 MobiDBLite consensus disorder prediction 1035 1052 - -
Lal9g0679 1079 MobiDBLite consensus disorder prediction 887 917 - -
Lal9g0679 1079 MobiDBLite consensus disorder prediction 882 1079 - -
Lal9g0679 1079 CDD RRM1_RBM28_like 19 123 - -
Lal9g0679 1079 SMART rrm1_1 19 118 IPR000504 GO:0003723
Lal9g0679 1079 SMART rrm1_1 617 695 IPR000504 GO:0003723
Lal9g0679 1079 SMART rrm1_1 327 406 IPR000504 GO:0003723
Lal9g0679 1079 SMART rrm1_1 769 861 IPR000504 GO:0003723
Lal9g0679 1079 MobiDBLite consensus disorder prediction 942 960 - -
Lal9g0679 1079 MobiDBLite consensus disorder prediction 120 179 - -
Lal9g0679 1079 SUPERFAMILY RNA-binding domain, RBD 14 135 IPR035979 GO:0003676
Lal9g0679 1079 Gene3D - 558 713 IPR012677 -
Lal9g0679 1079 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 618 676 IPR000504 GO:0003723
Lal9g0679 1079 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 328 403 IPR000504 GO:0003723
Lal9g0679 1079 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 65 IPR000504 GO:0003723
Lal9g0679 1079 Gene3D - 754 861 IPR012677 -
Lal9g0679 1079 MobiDBLite consensus disorder prediction 555 606 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0679 Lal-Chr9 4679147 4687403 Wgd