Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0677 ATGGAGTCACCGTTTAATCTTCATCTTTTACCGGCTAAACGCCCCGCTTCAACTGGGTTCTCTTCTGATGGGCAAAAAAGGTTAAACTTATCAAGCAATAGTCCGCCATACTCAGAACATGAAAAAACTGAGCATAAGACACCCGGGAAATTGTCAAATGTTGTGGATTACAGCAATCCGTTTGCGGTATCTGACTTCCTTAACTGTTTAGACAGTGGGAAATTTGGAAGTGTAACAAAGGACATAGAGTCCCTTTTTGCTCGAAAAATGCAAATACTGGGGAAGTACTTTGCTAAATATCCTACGCTTCTTGATCACTTAGTGAAAGAGGCAGTGAAGCATGATGAAGAAACTCATACGCTGAAAAGTCAACAAGTTGCTGGTCTGGCACAGAAAAATATAATTGATTTGGAGGGTAAGCACATTGAAAAGAATGTCCCTCCAGCACCATTGTCTGTTGTGATTATTGATTCAGATGAGGAGGATGATAGAGATAAAATATCATCCCTTCCATTTCATAAAGTTGTGTTGCCGAAACAAGCATCTCCTGCAGTGAGGATGACTGAGTCTTATCCTCCCACTCGATACAGTGAAGAAAATGAAGATCTAAGATTTGAGACTAGTTTTGCTGATAAAGGTGACAGAGGAAGAGATAAAGGTAAACATCTTGCTGATAAAGATAACATTGCCAGAGATAAAGGTGTTTATGTTGGTGTTGAGGAGGAAGAAGATGACCAGGTTGAGACAAAAGATGAAGAACTGGATGATATATGGAGGGAAATGTCAATGGCAATAGAATGCTCCAAAGATGTTTCTGTGAACTCTCAGCCCGATGAAGAATCCGAAAGAGATGAGGACTGTGATCACTCTTTTGTTTTAAAAGATGATCTTGGTTACGTTTGTCGCGTTTGTGGTGTTATCGACAGAGGAATCGAAACCATATTTGAGTTCCAGTACAAGGTTAAAAGGAGTACTAGAACTTATGTATCTGATTCATGGAATGCCAAAGAAAAAGATGCATTTGGAATTAAGATTGCTGAGGATGATCTCTTGGTAACTGATATCTCTGCGCACCCCAGGCATATGAAACAAATGAAGTCTCATCAAGTTGAAGGGTTCAATTTTCTTGTTAGAAACCTTGCAGGTGACCATCCCGGGGGCTGTATCTTGGCACATGCTCCAGGATCTGGGAAGACATTCATGATAATCAGTTTCATGCAGAGTTTTCTTGGCAAGTATCCTAATGCTAGACCTCTAGTGGTGCTTCCTAAGGGGATACTATCGACTTGGAAGAAGGAGTTCCAGACATGGCAAGTGGAGGACATACCGCTCTATGACTTTTACACTGTGAAGGCAGACAGTAGATCTCAGCAACTCGAAGTGTTGAAACAGTGGGTGGAACATAAGAGCATCCTTTTCTTAGGATATAAACAGTTCTCTTCAATCATATGTGAGAATGGAACTAACAGTTCATCAACAGCTTGCCAAGAGATATTGCTTAAGGTTCCTTCAATTCTCATTTTAGATGAGGGACACAATCCAAGGAATGATAATACTGATATGGTACATTCCCTTGCCAAAGTACAAACTCCTAGAAAAGTTGTACTGTCAGGAACCCTATATCAGAATCATGTCAAGGAGGTTTTTAACATCATAAATCTTGTGAGGCCGAAGTTTTTGAAGATGGAAACATCAAGGCTTATTGTCAAACGCATTTTCAGTAGAGTACATATACCTTCTGGTAAAAGAGGTTTCTTTGATTTGGTAGAAGACACATTGCAAAAGGACCCAGATTTCAGAAGGAAAGTGGCTGTTATACAAGATTTACGTGAGATGACTAGCCAGATACTTCACTATTATAAAGGAGATTTTCTTGATGAGCTTCCCGGTCTTGTTGAATTTACTGTGGTGCTCAACCTTACCCCTAGACAGAAGCTTGAAGCCGAGAAATTAAAGAAGTTATCCAGGAAGTTTAAGATTAGTTCTGTGGGCAGTGCTGTCTATCTTCATCCTAAATTGAAGCCCCTAGCCGAAAAATGTAGTGAAAATAGCAAAATTGATAATACAAAGGAACTGGATGATTTGATAGAGAAACTGGACGTGAAAGATGGTGTGAAATCAAAATTCTTTCGCAACATGTTGAACCTATGTGAATCGACTGGGGAGAAGCTGCTTGTTTTTAGCCAATATCTCTTGCCTTTGAAATATTTAGAAAGGTTAACTATGAAATGGAAGGGTTGGAGTGTCGGGAAAGAAATCTTTGTCATCTCAGGAGAATCAAGCACTGAAGAAAGAGAGTTGTCCATGGAAAAATTTAACAATTCACCTGATGCCAAAATCTTCTTTGGCTCAATTAAAGCATGTGGAGAAGGCATATCATTGGTTGGGGCATCCCGTATCATCATTGTGGATGTTCATCTCAACCCATCAGTTACACGCCAAGCCATCGGCCGTGCATTTCGACCTGGCCAGAAGAAGAAAGTTTTTGTATATCGGTTGATAGCTGCTGATTCTCCGGAAGAAGAAGATCACAGTACTTGTTTTAAGAAGGAATTAATTTCAAAAATGTGGTTTGAATGGAATGAGTATTGTGGTGATCGTGCTTTTGAAGTTGAGACAGTTCCTGTGAAAGAATGTGGTGATCTTTTTCTTGAAAGTCCGATTTTAGGGGAAGATGTTAAAGCTTTGTATAAAAGGTTAGCAACCACTCTTAATTACCTTTTTCTATTTTCACATGGCAATCACACAGTTTTTCTTTCAAAATGGTATTCTAAACTCAAAATATTTACTTCATTCCTATCTTGTAGAATGTGGCTGTTATGTTCAATGGACTTGGGAATGCAAATGTCTTTTGCTGTTATATCAGTACTTGTATTACTGGATTTCGGTTTAGAACAATGTAGGAGTTACTGA 2913 0.3924 MESPFNLHLLPAKRPASTGFSSDGQKRLNLSSNSPPYSEHEKTEHKTPGKLSNVVDYSNPFAVSDFLNCLDSGKFGSVTKDIESLFARKMQILGKYFAKYPTLLDHLVKEAVKHDEETHTLKSQQVAGLAQKNIIDLEGKHIEKNVPPAPLSVVIIDSDEEDDRDKISSLPFHKVVLPKQASPAVRMTESYPPTRYSEENEDLRFETSFADKGDRGRDKGKHLADKDNIARDKGVYVGVEEEEDDQVETKDEELDDIWREMSMAIECSKDVSVNSQPDEESERDEDCDHSFVLKDDLGYVCRVCGVIDRGIETIFEFQYKVKRSTRTYVSDSWNAKEKDAFGIKIAEDDLLVTDISAHPRHMKQMKSHQVEGFNFLVRNLAGDHPGGCILAHAPGSGKTFMIISFMQSFLGKYPNARPLVVLPKGILSTWKKEFQTWQVEDIPLYDFYTVKADSRSQQLEVLKQWVEHKSILFLGYKQFSSIICENGTNSSSTACQEILLKVPSILILDEGHNPRNDNTDMVHSLAKVQTPRKVVLSGTLYQNHVKEVFNIINLVRPKFLKMETSRLIVKRIFSRVHIPSGKRGFFDLVEDTLQKDPDFRRKVAVIQDLREMTSQILHYYKGDFLDELPGLVEFTVVLNLTPRQKLEAEKLKKLSRKFKISSVGSAVYLHPKLKPLAEKCSENSKIDNTKELDDLIEKLDVKDGVKSKFFRNMLNLCESTGEKLLVFSQYLLPLKYLERLTMKWKGWSVGKEIFVISGESSTEERELSMEKFNNSPDAKIFFGSIKACGEGISLVGASRIIIVDVHLNPSVTRQAIGRAFRPGQKKKVFVYRLIAADSPEEEDHSTCFKKELISKMWFEWNEYCGDRAFEVETVPVKECGDLFLESPILGEDVKALYKRLATTLNYLFLFSHGNHTVFLSKWYSKLKIFTSFLSCRMWLLCSMDLGMQMSFAVISVLVLLDFGLEQCRSY 970
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0677 970 Pfam Helicase conserved C-terminal domain 714 822 IPR001650 -
Lal9g0677 970 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 379 558 IPR014001 -
Lal9g0677 970 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 18 899 IPR044567 GO:0080188
Lal9g0677 970 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 336 560 IPR027417 -
Lal9g0677 970 PANTHER PROTEIN CHROMATIN REMODELING 35 18 899 - -
Lal9g0677 970 MobiDBLite consensus disorder prediction 1 51 - -
Lal9g0677 970 SMART ultradead3 361 570 IPR014001 -
Lal9g0677 970 Pfam SNF2-related domain 384 640 IPR000330 GO:0005524|GO:0140658
Lal9g0677 970 CDD SF2_C_SNF 697 834 - -
Lal9g0677 970 Gene3D - 629 883 IPR027417 -
Lal9g0677 970 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 709 872 IPR001650 -
Lal9g0677 970 MobiDBLite consensus disorder prediction 18 37 - -
Lal9g0677 970 Gene3D - 333 575 IPR038718 -
Lal9g0677 970 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 504 861 IPR027417 -
Lal9g0677 970 SMART helicmild6 738 823 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0677 Lal-Chr9 4662875 4669835 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lal9g0677 SNF2_N 6.5e-19 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0677 9 4662875 4669835 Lal9g0677 9 4662875 4669835 ECH
Lal1g0709 1 4736833 4744424 Lal9g0677 9 4662875 4669835 LSH