Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0669 ATGGCATCAAGTAGTCCATTCTTTGACGATATACGGAGCCATTCTGATGTTGATCCTCCTCAAATTGAAGAGTTGACAGATGTTAGTGAATTAGTGAATGATCCTACACAAACTGCTCTTAAACCTAATGGAACTGTTTCAAGCAGTGTTCGTGAGCTTTTAGAGTGCCCTGTATGCTTGAATGCCATGTACCCTCCAATCCACCAGTGTTCAAATGGTCACACTATATGCTCGGGTTGCAAACCCAGGGTCCACAACCGCTGCCCAACTTGTAGACATGAGCTTGGCAATATCAGATGTCTGGCACTGGAGAAGGTGGCTGCATCTTTGGAACTTCCCTGTAAATATCAAGGTTTCGGGTGCACTGGTATATATCCATATTACAGCAAGCTAAAGCATGAGTCTCAATGTGCACATAGACCCTATAACTGCCCATATGCTGGTTCAGAATGCTCTGTTATGGGTGATATACCCTACCTGGTGGCCCATCTAAAAGACGACCACAAAGTGGACATGCACAATGGTAGCACTTTTAACCATCGCTATGTCAAATCAAATCCACAAGAAGTTGAAAATGCCACATGGATGCTGACGGTTTTCAGCTGCTTTGGTCAGTATTTTTGTCTACATTTCGAAGCTTTTCAGTTAGGAACGGCTCCTGTGTACATAGCCTTTTTGCGGTTTATGGGCGATGACAACGAGGCAAAGAATTATACCTACAGTCTAGAGGTGGGTGGACATGGGAGGAAAATGATTTGGCAGGGAGTGCCAAGAAGCATTAGGGACACTCACCGCAAGGTTCGCGACAGTTTTGACGGTCTCATCATTCAGAGGAGTATGGCTCTCTTCTTTTCGGGTGGTGACCGGAAAGAGTTAAAATTAAGAGTAACTGGTAGAATTTGGAAAGAACAGTGA 915 0.4448 MASSSPFFDDIRSHSDVDPPQIEELTDVSELVNDPTQTALKPNGTVSSSVRELLECPVCLNAMYPPIHQCSNGHTICSGCKPRVHNRCPTCRHELGNIRCLALEKVAASLELPCKYQGFGCTGIYPYYSKLKHESQCAHRPYNCPYAGSECSVMGDIPYLVAHLKDDHKVDMHNGSTFNHRYVKSNPQEVENATWMLTVFSCFGQYFCLHFEAFQLGTAPVYIAFLRFMGDDNEAKNYTYSLEVGGHGRKMIWQGVPRSIRDTHRKVRDSFDGLIIQRSMALFFSGGDRKELKLRVTGRIWKEQ 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0669 304 CDD RING-HC_SIAHs 54 92 - -
Lal9g0669 304 ProSiteProfiles Zinc finger RING-type profile. 56 92 IPR001841 -
Lal9g0669 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 17 108 IPR013083 -
Lal9g0669 304 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 109 164 IPR013083 -
Lal9g0669 304 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 165 297 IPR008974 GO:0005515
Lal9g0669 304 SUPERFAMILY RING/U-box 48 96 - -
Lal9g0669 304 Pfam Seven in absentia protein family 98 297 IPR018121 GO:0005737|GO:0006511|GO:0007275
Lal9g0669 304 ProSiteProfiles Zinc finger SIAH-type profile. 109 169 IPR013010 GO:0008270
Lal9g0669 304 SUPERFAMILY TRAF domain-like 109 301 - -
Lal9g0669 304 CDD Sina 170 298 - -
Lal9g0669 304 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 7 304 - -
Lal9g0669 304 PANTHER E3 UBIQUITIN-PROTEIN LIGASE DIS1 7 304 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0669 Lal-Chr9 4606181 4609797 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal1g0691 1 4551213 4555286 Lal9g0669 9 4606181 4609797 LSH
Lal2g0762 2 4883949 4887051 Lal9g0669 9 4606181 4609797 LSH