Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0659 ATGTTTCAACTTCAAGATCCTTCAATTAAGCTTTTTGGAACAAATATTCATACTCATATTCCCATTCAACACTCTCAATACATCAATATCACCATGAATGGATATGAAGAGCCATCAAAATCTGAAATGAATGTGCCTTTGAAGAAAGTATCTGGTGAACACACTGATCCTCTAGAATATGCAAAAGATATTCCAAATACTAATGAAAGTCCTACTCCAGAACTGGTGTCCAAATTAGTTCATGGAACTAATGAAGGCAAGGCTGCTAAAAGATATATCGATGAAAAAGAAAAAGTTTTAAAGAAGCCAGACAAGGTCCTGCCGTGTCCACGCTGCAATAGTTTGGAAACAAAGTTCTGCTATTTCAACAATTATAATGTTAACCAACCTAGGCATTTCTGCAAGAATTGCCAGAGATATTGGACAGCTGGGGGGACAATAAGAAATGTTCCCGTTGGGGCCGGTAAGCGCAAAAATAAGCCCTCGGATTTGCAGTATTGTCAAGAACCTGTGGCTCCTGATGCAGTATCTAGCATCCAGCCAGATACCAACCTTGCTAGTAATGCACATTTATCATCAAGGCCTTTCAATGAAATGAGGAATATACATGGTCCGGGGGAGGATGCTCCTCTTAGTGAATCCTTCGAAACCGTGTTAAATCTCGAAGGCCAGAAAAAAGTTGAAGTGGATACTTCTACTCTCAAAGATGATGGTGAGGAGCCTTCTAGCTCTTCAATGAGATCTGCTGAATCCTGTGAGAAGCAATATTCAGAAAGTAGAGTAGAACAAGTAGGCTTGACACAACAATGTAATGTTGTAACCCCTTTACACCCACTTCATTATTATTCTGTACCTCCATGGCCTTACCAATGGAATCCATGTTGGAATGCCGTGACTTTTAGACCTAGTAACGTAACTTCTAGTCCTGCTTATCTGAGCTCAGAAACCATGATGGCAGTTCCAGGCTTCTCCATACCAACCGTAGAACTACCGGTAGCTCCCTCTTTGTATTGGTTGGTGGAAGAGTCTTCATTGGTCGGTGTTGGTGGATCCACAATTAGTGGCATCCCATCACCTTCATCTTCAGTTAGCAATAGTGCTTGTTCTGGCAATAGGTCTCCAACCTTAGGAAAACATTGTAGAGATGGAAGTACAACAGGAGATGATACAACGAAATCGAATCTTTGGGTACCTAAGACTGTAAGAATTAATGATGCAAATGAGGCTGCAAAGAGTTCTATATGGTCAACTTTGGTTACAAAATCTGAAGATTCTGAACAGAACAAGCCTATTATAAAAGGAAGTGTTTTTAAATCATTTGAACCGAAGTCGAATGCCGATTCTCGTATTTTAGATGATAATCAAATTCTAAAGGCAAACCCTGCTGCTTTCTCTCGCTCTGAATCTTTTCAGGAAAGCATGTGA 1425 0.4028 MFQLQDPSIKLFGTNIHTHIPIQHSQYINITMNGYEEPSKSEMNVPLKKVSGEHTDPLEYAKDIPNTNESPTPELVSKLVHGTNEGKAAKRYIDEKEKVLKKPDKVLPCPRCNSLETKFCYFNNYNVNQPRHFCKNCQRYWTAGGTIRNVPVGAGKRKNKPSDLQYCQEPVAPDAVSSIQPDTNLASNAHLSSRPFNEMRNIHGPGEDAPLSESFETVLNLEGQKKVEVDTSTLKDDGEEPSSSSMRSAESCEKQYSESRVEQVGLTQQCNVVTPLHPLHYYSVPPWPYQWNPCWNAVTFRPSNVTSSPAYLSSETMMAVPGFSIPTVELPVAPSLYWLVEESSLVGVGGSTISGIPSPSSSVSNSACSGNRSPTLGKHCRDGSTTGDDTTKSNLWVPKTVRINDANEAAKSSIWSTLVTKSEDSEQNKPIIKGSVFKSFEPKSNADSRILDDNQILKANPAAFSRSESFQESM 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0659 474 MobiDBLite consensus disorder prediction 175 211 - -
Lal9g0659 474 MobiDBLite consensus disorder prediction 226 256 - -
Lal9g0659 474 MobiDBLite consensus disorder prediction 357 373 - -
Lal9g0659 474 Pfam Dof domain, zinc finger 104 160 IPR003851 GO:0003677|GO:0006355
Lal9g0659 474 MobiDBLite consensus disorder prediction 177 195 - -
Lal9g0659 474 MobiDBLite consensus disorder prediction 357 393 - -
Lal9g0659 474 ProSitePatterns Zinc finger Dof-type signature. 109 145 IPR003851 GO:0003677|GO:0006355
Lal9g0659 474 ProSiteProfiles Zinc finger Dof-type profile. 107 161 IPR003851 GO:0003677|GO:0006355
Lal9g0659 474 MobiDBLite consensus disorder prediction 228 243 - -
Lal9g0659 474 PANTHER CYCLIC DOF FACTOR 2 14 474 IPR045174 GO:0003700|GO:0006355
Lal9g0659 474 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 14 474 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0659 Lal-Chr9 4533936 4541432 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0659 1 474 C2C2-Dof Transcription Factor Family AT3G47500 34.469 9.24e-63 209
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal9g0659 zf-Dof 9.9e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0659 - - gmx:102666857 522.316