Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0653 ATGAAGAGGTCTCATGCATCTTCATGTTCATCATCTTCATCTTCTAATGTTGGGTTTGAAACTACCATTGAAAAAAGAAGGCCTAAGCAACCAAGAAGTAATGTTAAGTCACAACAATGTAATAGCCAGAGCCAAATCACTGGCAGAAGAAGTTCCATTTATAGAGGAGTTACAAGGCATAGATGGACTGGAAGGTTTGAAGCTCATCTATGGGATAAGAGTTCTTGGAACAGCATTCAGAACAAGAAGGGTAGACAAGGGGCATATGATAGTGAAGATGCTGCAGCCCGAACCTATGATCTTGCAGCCCTAAAGTATTGGGGAAATGATGCAACTTTAAATTTCCCGATTGAAACATATTGCAAGGACCTTGAGGAAATGAATAAGGTCACAAGAGAAGAATTCTTGGCTAATTTAAGGCGTCAAAGTAGTGGCTTTTCTAGAGGTGTTTCTAAGTACCGTGGGGTAGCAAGGCATCACCATAATGGCCGTTGGGAGGCTAGAATTGGGAGAGTATGTGGTAACAAATACCTTTACTTAGGGACATATAAAACTCAAGAGGAAGCAGCTATAGCATATGATATGGCAGCAATAGAGCACAGAGGACTCAATGCTGTGACAAATTTTGACATAAGCAATTACATTGATAAAGTAAAGATGAATAATGAGCCATCCCAAGAAGCTGAAACACAAACAGAAACAGCTCCTAGTTCAACTGATTCTGAAGAAGTAGAAGCAGAAGTTGAACAGAAAAACACACCACAACCTCAACCAGAAATTGTAGACATTGAACCACAACAAATTCAATACACAAATGTTGTTCTAAGTGAAGAATCTCCACAAGTTATTCCTATGGACCATGTTTTTGATCAGGACATACCATGGAACTTCATGGATACTAATTTATCTCAGTTTCAAGACATAGACTTGGGTTTGTGTGAAAAAGAGGATTTTTTAAGCATGTTTGATGGTAAAGGCTTTGAGGATGATATTGATTTTTTGTTCAACACAGAACCTGGTGCTGGTGATTTTAATTTCAATGCAATTTTGGATAGCATTGTTTAG 1065 0.384 MKRSHASSCSSSSSSNVGFETTIEKRRPKQPRSNVKSQQCNSQSQITGRRSSIYRGVTRHRWTGRFEAHLWDKSSWNSIQNKKGRQGAYDSEDAAARTYDLAALKYWGNDATLNFPIETYCKDLEEMNKVTREEFLANLRRQSSGFSRGVSKYRGVARHHHNGRWEARIGRVCGNKYLYLGTYKTQEEAAIAYDMAAIEHRGLNAVTNFDISNYIDKVKMNNEPSQEAETQTETAPSSTDSEEVEAEVEQKNTPQPQPEIVDIEPQQIQYTNVVLSEESPQVIPMDHVFDQDIPWNFMDTNLSQFQDIDLGLCEKEDFLSMFDGKGFEDDIDFLFNTEPGAGDFNFNAILDSIV 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0653 354 CDD AP2 151 212 IPR001471 GO:0003700|GO:0006355
Lal9g0653 354 Gene3D AP2/ERF domain 53 118 IPR036955 GO:0003700|GO:0006355
Lal9g0653 354 Gene3D AP2/ERF domain 151 212 IPR036955 GO:0003700|GO:0006355
Lal9g0653 354 SMART rav1_2 53 122 IPR001471 GO:0003700|GO:0006355
Lal9g0653 354 SMART rav1_2 152 216 IPR001471 GO:0003700|GO:0006355
Lal9g0653 354 MobiDBLite consensus disorder prediction 222 241 - -
Lal9g0653 354 MobiDBLite consensus disorder prediction 222 258 - -
Lal9g0653 354 ProSiteProfiles AP2/ERF domain profile. 53 116 IPR001471 GO:0003700|GO:0006355
Lal9g0653 354 CDD AP2 52 117 IPR001471 GO:0003700|GO:0006355
Lal9g0653 354 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Lal9g0653 354 PRINTS Ethylene responsive element binding protein signature 192 212 IPR001471 GO:0003700|GO:0006355
Lal9g0653 354 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR WRI1 1 275 - -
Lal9g0653 354 SUPERFAMILY DNA-binding domain 151 212 IPR016177 GO:0003677
Lal9g0653 354 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 275 - -
Lal9g0653 354 Pfam AP2 domain 53 108 IPR001471 GO:0003700|GO:0006355
Lal9g0653 354 Pfam AP2 domain 151 201 IPR001471 GO:0003700|GO:0006355
Lal9g0653 354 MobiDBLite consensus disorder prediction 1 21 - -
Lal9g0653 354 MobiDBLite consensus disorder prediction 33 49 - -
Lal9g0653 354 MobiDBLite consensus disorder prediction 1 49 - -
Lal9g0653 354 ProSiteProfiles AP2/ERF domain profile. 152 210 IPR001471 GO:0003700|GO:0006355
Lal9g0653 354 SUPERFAMILY DNA-binding domain 52 118 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0653 Lal-Chr9 4495661 4499414 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0653 21 214 AP2-EREBP Transcription Factor Family AT5G57390 62.944 5.61e-83 257
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-AP2 Lal9g0653 AP2 6.7e-09 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0653 9 4495661 4499414 Lal9g0653 9 4495661 4499414 ECH
Lal1g0672 1 4384292 4388369 Lal9g0653 9 4495661 4499414 LSH