Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0623 ATGCTGAAAATGGAAGATGGGGAATCTGGAATTGCTTTGCTCGATAATAGTGACAAATCCGAGTCTCGATTCGCAGAGTTCTGCAAGAATGGACTATCATTGGATGAGAAAAATTGTAAAGAAGCAATGAATCTGTTTGGAGAAACCAAACATCTTCTACTGTCAAATGTTTCATCAGTTGGGATTGGAACGTCTGAAGAAGCAGAGCGTTATTGGTTTGCTTTTATTTTATATTCTATCAAGAGGTTGACTCGGAAAAATGAGGAGACCGGGAAGGAAAAGTCTGATTACGCTGGGCTTACCTTGTGCCGTATAATGAGAGCAACTAAGCTTAACATTGCAGATTTTTTCAGAGAACTTCCTCAGTTTATTGTTAAGGCTGGTCCAATTTTAAGTAATATATATGGCACAGATTGGGAAAACAGGCTTGAGGCGAAGGAGATGCATGCCAATACTATTCACTTAAAGATTCTTAGCAAGTACTATAAACGTGTATTTGAGGAATTCTTTGTGGCAATTGATGCAAATGTGGAAAAGAACACATATGTAACTGTTCATGCATCTGAATACCTTCGCTTTGGTTGGTTACTTTTTCTGGCAATTCGTATTCATGCTTTCAGCCGTTTCAAAGACTTGGTATCTTCCACCACTGGTTTAATTTCGATCTTGGCTATCTTGATTATTCATGTTCCCGCTCGCTTTCGGAATTTCAGCATTCATGACTCTCGCTTTGTTAAGAAAAGTAACAAAGGTGTGGACCTCCTTTCATCGCTTTGCGACATTTATAACACTTCAGAAGACGAGTTGAGGAAAACCACGGTGAAAGCCAATAATTTAATTGCAGATATATTGAAGAAGAAGCCCTGTTTGGCGTCTGAATGTGAAACTGAAAACCTAGAGAACTTTGATAAAGATGGTTTGACCTATTTTAAAGATCTAATGGATGACTCATCTCTGCTATCCAGTTTAAATATTTTAGAAAAAGATTATGATGACATGTTTCGCAAGAAGGGTGAACTGGATGAAAGATTGTTCATTAATGAGGAAGACAGCTTGTTAGCTTCAGGAAGTTTGTCTGGAGGTTCTGTTTCCTCAAGTGGTGTTAAGAGGAAATGCGATTTGATGTCATCACCTGTTAAGACTATTTCAAGCCCACTCTCACCCCACCGCTCTCCTGTATCTTATGCTAACGGCATTCTGGGTAGTGCAAATTCGAAGATGGCAGCCACTCCTGTAAGCACGGCAATGACTACTGCAAAGTGGCTTCGTACTGTCATTTCTCCACTTGCATCAAGGCCCTCACAAGATCTGGAGCGATTCTTGACATCTTGTGACAAGGATGTTACAGGTGATGTGGTGCGCAGGACGCAGATTATTTTGCAGGCTATATTTCCTAGTAGTCCTCTTGGAGAAAGGTGTGTAACTGGAAGTCTGCGAAGTGCAAATCTCATGGACAATATTTGGGCAGAGCAGCGAAGATTGGAAGCCCTGAAGTTATACTACAGGGTATTGGAAGCAATGTGCAGAGCAGAAGCCCAAATACTCCATACAACTAATTTGACCTCACTACTAACTAATGAGAGGTTCCATCGGTGTATGCTCGCATGTTCTGCAGAACTAGTCCTGGCAACTCACAAGACTGTAACAATGTTGTTCCCTGCAGTGCTGGAAAGGACTGGAATTACGGCTTTTGATCTGAGCAAGGTGATTGAAAGTTTCATTAGACATGAAGAATCTCTCCCCAGAGAGTTGAGGCGGCATTTGAATTCGTTGGAAGAACGACTTTTAGAGAGCATGGTATGGGACAAAGGTTCCTCGATGTATAATTCCTTGGCAGTTGCTAAACCTTCCCTTTCGGGTGAAATAAGTCGTTTAGGACTCTTAGCTGAGCCAATGCCATCATTGGATGAAATTGCCATGCATATTAACTTCTCTTGTGGAGGGCTGCCTCCTTTGCCTTCCTTACCTAAGCTTGAGACCTCACCAACTCAGAATGGGGATATCAGATCACCAAAGCGGCTCTGTACTGAATATCGAAATGTGTTGGTTGATCGAAATTCTTTCACTTCACCAGTGAAAGACCGGTCACTTCTTTTCAGCAACCTTAAGTCAAAGCTACCCCCACCTCCTTTGCAATCCGCTTTTGCAAGTCCAACAAAACCAAATCCTGGAGGCGGAGGAGAAACATGTGCAGAAACTGGGATCAACATCTTTTTTAGCAAGATCGTTAAGTTGGGAGCAGTCAGAATAAGTGGCATGGTTGAAAGGCTACAATTATCTCAGCAGATAAGGGAGAATGTATACACCCTTTTCCAGAAAATCCTAAATCAATGCCCATCTCTCTTCTTCAACCGCCATATTGACCAAATCATCTTGTGTTGCATATATGGAGTTGCCAAGATTTCTCAACTGAACCTAACTTTCAGGGAGATCATAAACAACTATAGAAAGCAACCACAATGCAAACTACAAGTTTTTCGCAATGTATTTGTGGACTGGTCATTGACACACGGAAAGGGGAGAACTGGACAGGAACATATTGACATCATTACATTTTACAATGAAATATTCATTCCAACCGTAAAGCCGTTGCTGGTTGAACTGGGACCTGGGGAGACAAATATGAAAAGCAACCGGATACCTGAAGTTAATAATAAAAATAATGTCCATTTAGCACAATGTCCTGGGTCACCTAAAATATCTCCTTTCCCAAGCCTTCCTGATATGTCTCCAAAAAAAGTATCTTCCACACACAATGTTTATGTTTCACCATTACGATCGTCTAAGATGGATGCCCTAATATCACATGGGTCAAGAAGTTATTATGCATGTATTGGGGAAAGCACTCATGCATACCAAAGCCCTTCAAAAGACTTGACTGCCATCAATAACCATTTGAAAGGCAACCGGAAGGTGAGAGGTCCACTCAATTTCGATGAAGTCGATATTGGTTTAGTTAGCGACTCTATGGTTGCGAACAGCCTCAATCTACGGAATGGAAGTTGTGCATCATCATCATCATCAGGTGCACCATTGAAGTCTGAGCAACATGAATGA 3057 0.4138 MLKMEDGESGIALLDNSDKSESRFAEFCKNGLSLDEKNCKEAMNLFGETKHLLLSNVSSVGIGTSEEAERYWFAFILYSIKRLTRKNEETGKEKSDYAGLTLCRIMRATKLNIADFFRELPQFIVKAGPILSNIYGTDWENRLEAKEMHANTIHLKILSKYYKRVFEEFFVAIDANVEKNTYVTVHASEYLRFGWLLFLAIRIHAFSRFKDLVSSTTGLISILAILIIHVPARFRNFSIHDSRFVKKSNKGVDLLSSLCDIYNTSEDELRKTTVKANNLIADILKKKPCLASECETENLENFDKDGLTYFKDLMDDSSLLSSLNILEKDYDDMFRKKGELDERLFINEEDSLLASGSLSGGSVSSSGVKRKCDLMSSPVKTISSPLSPHRSPVSYANGILGSANSKMAATPVSTAMTTAKWLRTVISPLASRPSQDLERFLTSCDKDVTGDVVRRTQIILQAIFPSSPLGERCVTGSLRSANLMDNIWAEQRRLEALKLYYRVLEAMCRAEAQILHTTNLTSLLTNERFHRCMLACSAELVLATHKTVTMLFPAVLERTGITAFDLSKVIESFIRHEESLPRELRRHLNSLEERLLESMVWDKGSSMYNSLAVAKPSLSGEISRLGLLAEPMPSLDEIAMHINFSCGGLPPLPSLPKLETSPTQNGDIRSPKRLCTEYRNVLVDRNSFTSPVKDRSLLFSNLKSKLPPPPLQSAFASPTKPNPGGGGETCAETGINIFFSKIVKLGAVRISGMVERLQLSQQIRENVYTLFQKILNQCPSLFFNRHIDQIILCCIYGVAKISQLNLTFREIINNYRKQPQCKLQVFRNVFVDWSLTHGKGRTGQEHIDIITFYNEIFIPTVKPLLVELGPGETNMKSNRIPEVNNKNNVHLAQCPGSPKISPFPSLPDMSPKKVSSTHNVYVSPLRSSKMDALISHGSRSYYACIGESTHAYQSPSKDLTAINNHLKGNRKVRGPLNFDEVDIGLVSDSMVANSLNLRNGSCASSSSSGAPLKSEQHE 1018
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0623 1018 Gene3D - 694 886 - -
Lal9g0623 1018 Pfam Retinoblastoma-associated protein B domain 735 862 IPR002719 GO:0005634|GO:0051726
Lal9g0623 1018 Gene3D - 190 347 - -
Lal9g0623 1018 SUPERFAMILY Cyclin-like 733 905 IPR036915 -
Lal9g0623 1018 SMART DUF3452_2 86 229 IPR024599 -
Lal9g0623 1018 PANTHER RETINOBLASTOMA-ASSOCIATED PROTEIN RB -RELATED 16 1004 IPR028309 GO:0006357|GO:0051726
Lal9g0623 1018 Pfam Retinoblastoma-associated protein A domain 410 611 IPR002720 GO:0005634|GO:0051726
Lal9g0623 1018 Gene3D - 413 601 - -
Lal9g0623 1018 Pfam Domain of unknown function (DUF3452) 98 229 IPR024599 -
Lal9g0623 1018 SUPERFAMILY Cyclin-like 418 613 IPR036915 -
Lal9g0623 1018 SMART RB_A_2 410 611 IPR002720 GO:0005634|GO:0051726
Lal9g0623 1018 PANTHER BNACNNG22930D PROTEIN 16 1004 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0623 Lal-Chr9 4250400 4258098 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR RB Lal9g0623 RB_A 5.4e-64 CL0065
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal2g0714 2 4414789 4422286 Lal9g0623 9 4250400 4258098 LSH