Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0607 ATGTCACAACAGCCATCGCTTCCCCCGCCTCCGCCGCCGCAACCACAACCTCCTACTCCTTCCTCATACCCTCCCTCCGACAACGTCCGCGTCCGTTGCGCCGGCTGCAGAATGATCCTCACCGTTGCTCCCGGCCTCACCGAATTCGCTTGCCCTACCTGCCGAATGCCACAGATGCTTCCACCTGAGCTCATGGCTAGGGTTCAACACCACACTACGCCACCGAATAATCTTCATCCTCAAACGACGTCGCATCCTTCTCTCCTTCTTCCTCCTCATCCGTCTTCTGCTTCGTCATCGTCGTCTTCGCACGTGCCGGCTCACGGTATCGATCCGACTAAGATCCAGCTTCCCTGTGCTAAGTGCAAAGCTATCCTCAATGTACCGCATGGACTTGCACGATTCTCTTGTCCTCAATGTGGAATTGAACTCGCTGTCGATGTTTCCAAGGTCAAGCAATTCTTCCCTCCTGAAGAAGTCAACGAGGTAGCTGTTGAAGTAGAGCGGGAGGAAGATGAAGGTGGCTTGGTGGGAGAAACATTTACAGATTATCGACCACCAAAAGTCTCTATCGGACCTCCACACCCAGATCCTGTTGTGGAGACATCTTCCTTGTCCGCAGTGCAGCCGCCAGAGCCTACTTATGATCCAAAAACTACAGATATTTTGGAAAGTACAAAAGCTTTGTCATGCTTGCAAATTGAGACATTGGTCTATGCTTGTCAGAGGCACCTTCAACACCTCCCCAATGGTGCTAGGGCTGGATTCTTTATTGGAGATGGAGCTGGTGTGGGCAAAGGTCGAACAATTGCTGGGTTAATTTGGGAGAACTGGCACCACGGACGGAGAAAAGCATTGTGGATTTCTGTTGGTTCAGACTTGAAGTTTGATGCCAGAAGAGACTTGGATGATGTGGGTGCCACATGCATTGAAGTGCATGCTTTGAACAAACTGCCTTATGGTAAGCTTGATTCAAAGTCTATTGGGATCAGGGAAGGAGTTGTTTTCATGACATACAATAGCCTCATAGCATCTTCTGAGAAAGGTCGTTCTCGTCTCCAACAACTTGTGCAGTGGTGTGGACCAGGGTTTGATGGTCTTATAGTTTTTGATGAGTGTCACAAAGCAAAAAATTTGGTCCCTGAATCTGGTAGTCAGCCAACACGAACTGGAGAAGCAGTGCTTGATATCCAGGATCGACTACCTGAAGCACGTGTTGTTTATTGTTCTGCAACTGGTGCATCCGAACCTCGCAATATGGGTTATATGGTTCGACTTGGCCTTTGGGGAGCTGGGACTTCTTTCTCTGAATTCCGTGAATTTTTAGGTGCTCTTGATAGAGGGGGTGTTGGAGCTCTAGAACTAGTTGCCATGGACATGAAAGCAAGGGGGATGTATTTATGTCGGACACTTAGCTACAAGGGTGCCGAATTTGAAGTTATTGAAGCACCATTAGAAGATGAAATGATGGACATGTATAAAAAGGCAGCAGAATTTTGGGCTGAATTGCGAGTAGAATTGTTGTCAGCCAGTGCCTTCTTAAATGAGAAACCTAATTCTAGTCAACTATGGCGATTATACTGGGCAAGCCATCAGCGTTTCTTTGGACATATGTGTATGTCTGCTAAAGTCCCTGCTGCTGTGAGACTAGTGAAGAAAGCATTAATCGAAGATAAGTGTGTTGTCATTGGTCTTCAGAGTACTGGAGAAGCAAGGACAGAGGAAGCTGTGACAAAATATGGTTCTGAACTTGATGACTTTGTTTCCGGACCTCGAGAATTGCTGCTCAAGTTTGTAGAAGAAAATTACCCGTTACCAGAAAAACCTGAACTTCTCCCAGGAGAGGATGGTGTAAAGGAGCTCCAAAGGAAGAGACACTCGGCCAATCCTGATGTTTCAGTTAAAGGAAGGGTTAGAAAAGTTGCCAAGTTGCAACCTCCTAGTGATGTTGAAAGTGATGAAGAATCTGAAACTGACTCTGCTATTGAATCTACTGACTCTGATGACGAGTTTCAGATATGTGAAATTTGCACTACTGAGGAGGAAAGGAAAAAATTGCTTAAGTGTTCCTGTTGCGGTAAATTAGTCCATTCAGCATGCTTAATGCCACCAATTGGTGATATAGTTCCTGAAGAGTGGTCATGCCATTTGTGCAAAGAAAAAACAGACGAATATCTTATAGCAAGACAAGCTTACATAGATGAACTCCAGAAGAGGTATGATGCGGCCTTGGAGCGCAAGACAAAAATATTAGAGATCATTCGTTCTTTGGATCTTCCAAATAATCCCTTGGATGATATTATTGACCAGGTAGGAGGACCTGACAAAGTTTCAGAAATGACAGGAAGGAGAGGCATGCTCGTAAGGGCCACTAATGGGAAGGGTGTAACTTATCAGGCTCGTAATACAAAGGATGTCACTATGGAAATGGTTAACATGCACGAAAAGCAGCTCTTTATGGATGGTAAAAAGTTAGTTGCCATTATCTCTGAAGCTGGATCAGCTGGTGTTTCTTTGCAGGCAGATAGAAGGGCCAAAAATCAGAAAAGAAGGGTTCATTTGACTCTAGAACTACCATGGAGTGCAGACCGAGCAATTCAGCAGTTTGGAAGAACTCATCGATCAAATCAAGCTTCAGCACCAGAATACAGGTTACTCTTTACTAATCTTGGTGGAGAAAGACGGTTTGCATCAATTGTTGCTAAGAGATTAGAATCTCTTGGTGCTTTGACTCAGGGGGACCGCAGGCACGTTATATTGTTACTGACTTCCTTATTGGCTTACAGGGCTGGACCTTCTTTAAGTGCCTATAATTATGATAGTGCTTATGGAAAAAGGGCTTTGATGATTATGTACAAAGGAATAATGGAGCAGGATTCACTGCCTGTTGTACCTCCAGGTTGTTTGTCAGACAGACCAGATACTATTCAAGATTTTATTATTCAGGCAAAAGCTGCTCTTGTATCTGTTGGAATAGTTAGGGACACAATTCTTGGTAATGGTAAAGATCTTGGAAGGTTATCTGGTCGTATTATCGATTCTGATATGCATGATGTTGGACGATTCCTGAACCGGCTTTTGGGACTACCTCCTGAGATTCAGAATAGGCTATTTGAGTTATTTGTAAGTGTCTTGGATCTTCTCGTTCAGAATGCTCGCATTGAAGGTAACCTTGATGCAGGCATAGTTGACTTGAAAGCTAATGTCATTGAACTACAAGGGACTCCCAAGACGGTTCATGTGGATCAAATGACAGGGGCTTCGACGGTTTTGTTTACATTCATCTTGGATCGTGGGATCACATGGGAGTTAGCAAGTACCATGCTGAATGAAAAGCAGAAGGATGGACTTGGGTCATCCAATGATGGCTTCTACGAGTCCAAGAGAGAGTGGTTGGGAAAACGTCATGTCATTTTAGCATTTGAAAGTTCTGATTCGGGCATGTATAAGATAGTTCGCCCCCCTGTTGGAGAATCAATCCGGGAGATGCCTCTGTCCGAACTAAAAACTAAATATAGAAAAGTTTCATCATTAGAGAAGGCTCAAACTGGTTGGGAAGAGGAATATGAAGTTTCATCTAAACAGTGCATGCATGGGCCCAAGTGTAAGATTGGCAACTTCTGTACAGTTGGCAGAAGACTACAGGAAGTAAATGTCTTGGGCGGCCTCATTCTTCCTGTTTGGGGAGCTGTAGAAAAGGCCCTTGCTAAGCAGGCCCGCCTAAGCCATAGAAGGCTGCGTGTTGTACGTATTGAAACTACTGTGGACAATCAACGTATTGTTGGGCTTCTTGTTCCAAATGCTGCAGTTGAAACTGTGCTTCAAGGTTTAGCATGGGTTCAAGAAATTGATGATTGA 3858 0.4469 MSQQPSLPPPPPPQPQPPTPSSYPPSDNVRVRCAGCRMILTVAPGLTEFACPTCRMPQMLPPELMARVQHHTTPPNNLHPQTTSHPSLLLPPHPSSASSSSSSHVPAHGIDPTKIQLPCAKCKAILNVPHGLARFSCPQCGIELAVDVSKVKQFFPPEEVNEVAVEVEREEDEGGLVGETFTDYRPPKVSIGPPHPDPVVETSSLSAVQPPEPTYDPKTTDILESTKALSCLQIETLVYACQRHLQHLPNGARAGFFIGDGAGVGKGRTIAGLIWENWHHGRRKALWISVGSDLKFDARRDLDDVGATCIEVHALNKLPYGKLDSKSIGIREGVVFMTYNSLIASSEKGRSRLQQLVQWCGPGFDGLIVFDECHKAKNLVPESGSQPTRTGEAVLDIQDRLPEARVVYCSATGASEPRNMGYMVRLGLWGAGTSFSEFREFLGALDRGGVGALELVAMDMKARGMYLCRTLSYKGAEFEVIEAPLEDEMMDMYKKAAEFWAELRVELLSASAFLNEKPNSSQLWRLYWASHQRFFGHMCMSAKVPAAVRLVKKALIEDKCVVIGLQSTGEARTEEAVTKYGSELDDFVSGPRELLLKFVEENYPLPEKPELLPGEDGVKELQRKRHSANPDVSVKGRVRKVAKLQPPSDVESDEESETDSAIESTDSDDEFQICEICTTEEERKKLLKCSCCGKLVHSACLMPPIGDIVPEEWSCHLCKEKTDEYLIARQAYIDELQKRYDAALERKTKILEIIRSLDLPNNPLDDIIDQVGGPDKVSEMTGRRGMLVRATNGKGVTYQARNTKDVTMEMVNMHEKQLFMDGKKLVAIISEAGSAGVSLQADRRAKNQKRRVHLTLELPWSADRAIQQFGRTHRSNQASAPEYRLLFTNLGGERRFASIVAKRLESLGALTQGDRRHVILLLTSLLAYRAGPSLSAYNYDSAYGKRALMIMYKGIMEQDSLPVVPPGCLSDRPDTIQDFIIQAKAALVSVGIVRDTILGNGKDLGRLSGRIIDSDMHDVGRFLNRLLGLPPEIQNRLFELFVSVLDLLVQNARIEGNLDAGIVDLKANVIELQGTPKTVHVDQMTGASTVLFTFILDRGITWELASTMLNEKQKDGLGSSNDGFYESKREWLGKRHVILAFESSDSGMYKIVRPPVGESIREMPLSELKTKYRKVSSLEKAQTGWEEEYEVSSKQCMHGPKCKIGNFCTVGRRLQEVNVLGGLILPVWGAVEKALAKQARLSHRRLRVVRIETTVDNQRIVGLLVPNAAVETVLQGLAWVQEIDD 1285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0607 1285 Pfam C-terminal domain on Strawberry notch homologue 762 1064 IPR026937 -
Lal9g0607 1285 Pfam P-loop containing NTP hydrolase pore-1 194 494 IPR039187 -
Lal9g0607 1285 MobiDBLite consensus disorder prediction 70 107 - -
Lal9g0607 1285 Coils Coil 733 753 - -
Lal9g0607 1285 MobiDBLite consensus disorder prediction 636 650 - -
Lal9g0607 1285 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 207 437 IPR027417 -
Lal9g0607 1285 PANTHER OS08G0223700 PROTEIN 26 1285 - -
Lal9g0607 1285 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 817 916 IPR027417 -
Lal9g0607 1285 ProSitePatterns Zinc finger PHD-type signature. 674 718 IPR019786 -
Lal9g0607 1285 MobiDBLite consensus disorder prediction 1 24 - -
Lal9g0607 1285 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 619 731 IPR013083 -
Lal9g0607 1285 SUPERFAMILY FYVE/PHD zinc finger 665 723 IPR011011 -
Lal9g0607 1285 MobiDBLite consensus disorder prediction 651 666 - -
Lal9g0607 1285 MobiDBLite consensus disorder prediction 70 108 - -
Lal9g0607 1285 MobiDBLite consensus disorder prediction 636 666 - -
Lal9g0607 1285 MobiDBLite consensus disorder prediction 1 26 - -
Lal9g0607 1285 ProSiteProfiles Zinc finger PHD-type profile. 671 721 IPR019787 -
Lal9g0607 1285 Gene3D - 222 424 IPR027417 -
Lal9g0607 1285 PANTHER STRAWBERRY NOTCH-RELATED 26 1285 IPR026741 GO:0006355
Lal9g0607 1285 SMART PHD_3 673 719 IPR001965 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0607 Lal-Chr9 4097575 4119439 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0607 9 4097575 4119439 Lal9g0607 9 4097575 4119439 ECH