Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0594 ATGAACCTCTACAATAACTACTCATTGGTGTTTCCGTTATCGGGAACCACCGCAGTTACTGCGTCGGACACTCTTCACCACCCGCCGCCACCGTATAGTTCGTTAATTCCTGATTCGTTTGCTACTCTGAAAACCATAACCGCTATGAAATCTGACGTCACCTCCACCAATGTTTCTGTATCGAGAAAACGCTCCATAGATTCTGTTGATTACCAGAATCGTGCTACAAATTTCTCATTTCTCGGTGAAGATATGTTCCTTCAAATCCATCAACAACAACAACTCGACATCGATAATCTCGTTTCGCAACACATGCAGAAGGTGAGAATGGAATTGGAAGAGAAGAGAAAGAGACAAGTGAGGATGTTAACGGAAGCGATTGAAGTCAGAGTGATGAAGAAGCTGAAATCAAAAGAAGAAGAGATAGAAAAGATTGAGAAATTGAACATTGCTCTCGAAGAAAAAGTCAAGTCTCTATGTATCGAAAACCAGATATGGCGAGATTTGGCGCAAACAAATGAGGCCAATGCAAATACTCTGAGATCAAATCTCATGCAGGCTCTATCTAATGTGAGAGAATCTGCCGGAGAATACGGCGGAGCCACCGTCGGAGCAACAGCGAACGATGCAGAGTCTTGCTGTGGAAGCAATGATGAAAATGAAGTGTGGCGCATGATAGGAGGAGTTGCGCAGGATAAGGAAGAAGAAAAGAGTGAGAGAATGTGCAGAAAGTGTGGGAAAGAGGAATCGTGTGTGGTGATCTTACCTTGCAGGCATTTGTGCCTATGTACTATTTGTGCATCTACCCTTCACACTTGTCCTATATGTAATTCCTTCAAAAATGCTACCCTCCATGTTAACCTTATTTAA 870 0.4287 MNLYNNYSLVFPLSGTTAVTASDTLHHPPPPYSSLIPDSFATLKTITAMKSDVTSTNVSVSRKRSIDSVDYQNRATNFSFLGEDMFLQIHQQQQLDIDNLVSQHMQKVRMELEEKRKRQVRMLTEAIEVRVMKKLKSKEEEIEKIEKLNIALEEKVKSLCIENQIWRDLAQTNEANANTLRSNLMQALSNVRESAGEYGGATVGATANDAESCCGSNDENEVWRMIGGVAQDKEEEKSERMCRKCGKEESCVVILPCRHLCLCTICASTLHTCPICNSFKNATLHVNLI 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0594 289 Coils Coil 128 162 - -
Lal9g0594 289 Pfam Zinc finger, C3HC4 type (RING finger) 239 278 - -
Lal9g0594 289 PANTHER SBP (S-RIBONUCLEASE BINDING PROTEIN) FAMILY PROTEIN 10 288 IPR017066 -
Lal9g0594 289 PANTHER BOI-RELATED E3 UBIQUITIN-PROTEIN LIGASE 2-RELATED 10 288 - -
Lal9g0594 289 ProSiteProfiles Zinc finger RING-type profile. 242 277 IPR001841 -
Lal9g0594 289 PIRSF SBP1_RNase_bind 14 289 IPR017066 -
Lal9g0594 289 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 224 287 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0594 Lal-Chr9 4000268 4001459 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0594 241 278 Miscellaneous Gene Families AT4G39050 39.474 2.46e-06 47.0
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0594 9 4000268 4001459 Lal9g0594 9 4000268 4001459 ECH
Lal1g0633 1 4087419 4088829 Lal9g0594 9 4000268 4001459 LSH
Lal2g0684 2 4170374 4171868 Lal9g0594 9 4000268 4001459 LSH
Lal1g1559 1 17947758 17950246 Lal9g0594 9 4000268 4001459 PCT
Lal9g0594 9 4000268 4001459 Lal1g1559 1 17947758 17950246 PCT