Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0583 ATGGCAACACTGTTGAATTCAATGTCTTCAGCTGCAAGTTTATCAGCAAAAACAAAACAAAAGGGGCATCATAGTTTACACCAGGTTCCAAAGTTTCATGCTTTTTCCCTAAACAATGGTTTTCCTAGTGTTTTGGCATCCACCCAGTTTGCAATTTCATCAAAAGATTCTGTTTTTACACTTCCCAATTGGAGGGCTGTGACTTGGAAAAACGAGAGAAAGAGCAAGGAGATAAGACTTAATGAAGCATTTCACTATTTGGAATATATGGTTGGTAAAGGCCATAAGCCTCATGTGTCTCAAGCAACTCAGCTTTTGTATGATCTTTGCAATTCTAAAAAAAGTAGGAAAGCTGTTAAAGTAATGGAGTTGATGGTAGGTTCTGGTGCTATGCCTGATGCAGCATGTTATACATCTTTGGTTAATCACTTGTGCAAGAGAGGAAGTGTCGGTTTTGGGATGCAATTGGTTGAAATGATGGAGGAAAATGGTTTTCCAACCAATACTTTCACCTATAACAGTTTGCTTAAAGGGCTTTGTATGCATGGAAATTTGGATCAGAGCATTCAGCTTTTGGATCGGTTTACGAAGAAGGGGCTAGTCCCTAATGCATTCACATACTCTTTCTTGCTTGAAGCTGCTTATAAGGAAAGGGGAGTGGATGAAGCTGTGGCTCTTCTCGATGATATCATTGCTAATGGCGGGGTGCCTAATTTAGTCAGTTACAATGTTTTGTTAACTGGTTTGTGCAAGGAAGGTAGAACTGATGAAGCTATTAAGCTTTTTAGGGAAATGCCGGCTAAGGGGTTTGACCCGAATGTTGTGAGTTATAACATTATACTGAAGAATTTGTGCTATGAAGGGCTGTGGGATGAAGCAAATGAGCTTTTAGAGGAGATTTATGAAACAAACCAGTCTCCCTCAGTTGTTACGTATAACATATTAATTACTTGTCTCTCGCTCCATGGAAGAACAGAAGATGCTCTGGAAGTATTAGATGAAATGACAAAGACTGGATTCAAGGCAACTGCTACGAGCTATAATCCAATTATTGCCCGTGGCTGCAAGGAAGGGAAAGTGGATCTTGTAGTTAAGTGGCTAGACCAAATGATTTCTCGACATTGTAAGCCTAATGAAGGAACATACAATGCTATTGCTGTGTTATGTGTGGAAGGGAAGGTGCAAGAGGCGATCTTTATAATCCAGAAGTTGGGTAATAAACAGAACTCATATACTATGCGTGAATTTTACAAAGTTGTGATTACAAGCTTGTGTAGAAAAGGCAACACATATCCAGCATTTCAGCTATTATATGAAATGATAAACTTAGGATTTACTCCAGATTCGTATACTTATTCAGCTTTGATAAGAGGGATATGTCGGGAGGGAATGTTAGATGGGGCTGTCGAGATTTTCCGGGTTTTGGAAGAAAATGATTACAAGCCTGATATTGATAACTATAATGCACTTATTCTTGGATTTTGCAAATATGGAAGTACAGAGTTTGCAATAGAGATAGTTCAGACAATGATTGATAAAGGATGCATGCCTAATGAGACCACCTACACCATTCTTGTGGAAGGGCTTGCTTCTGAGGACGAAATAGATATGGCCGCTGATCTTATGAATGAGTTATACTCAAAAGAGGTTTTGAGCCAAAGTACTGTTGAAAGGCTTTGTTTGCAGCATGATTTCAATGAACTAATAATCTAG 1713 0.3894 MATLLNSMSSAASLSAKTKQKGHHSLHQVPKFHAFSLNNGFPSVLASTQFAISSKDSVFTLPNWRAVTWKNERKSKEIRLNEAFHYLEYMVGKGHKPHVSQATQLLYDLCNSKKSRKAVKVMELMVGSGAMPDAACYTSLVNHLCKRGSVGFGMQLVEMMEENGFPTNTFTYNSLLKGLCMHGNLDQSIQLLDRFTKKGLVPNAFTYSFLLEAAYKERGVDEAVALLDDIIANGGVPNLVSYNVLLTGLCKEGRTDEAIKLFREMPAKGFDPNVVSYNIILKNLCYEGLWDEANELLEEIYETNQSPSVVTYNILITCLSLHGRTEDALEVLDEMTKTGFKATATSYNPIIARGCKEGKVDLVVKWLDQMISRHCKPNEGTYNAIAVLCVEGKVQEAIFIIQKLGNKQNSYTMREFYKVVITSLCRKGNTYPAFQLLYEMINLGFTPDSYTYSALIRGICREGMLDGAVEIFRVLEENDYKPDIDNYNALILGFCKYGSTEFAIEIVQTMIDKGCMPNETTYTILVEGLASEDEIDMAADLMNELYSKEVLSQSTVERLCLQHDFNELII 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0583 570 Pfam PPR repeat 306 336 IPR002885 -
Lal9g0583 570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 203 237 IPR002885 -
Lal9g0583 570 Pfam PPR repeat 136 165 IPR002885 -
Lal9g0583 570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 308 342 IPR002885 -
Lal9g0583 570 Gene3D Tetratricopeptide repeat domain 305 370 IPR011990 GO:0005515
Lal9g0583 570 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 1 568 - -
Lal9g0583 570 Gene3D Tetratricopeptide repeat domain 71 186 IPR011990 GO:0005515
Lal9g0583 570 TIGRFAM PPR: pentatricopeptide repeat domain 170 204 IPR002885 -
Lal9g0583 570 TIGRFAM PPR: pentatricopeptide repeat domain 240 274 IPR002885 -
Lal9g0583 570 TIGRFAM PPR: pentatricopeptide repeat domain 275 308 IPR002885 -
Lal9g0583 570 TIGRFAM PPR: pentatricopeptide repeat domain 450 484 IPR002885 -
Lal9g0583 570 TIGRFAM PPR: pentatricopeptide repeat domain 310 343 IPR002885 -
Lal9g0583 570 TIGRFAM PPR: pentatricopeptide repeat domain 136 167 IPR002885 -
Lal9g0583 570 TIGRFAM PPR: pentatricopeptide repeat domain 346 379 IPR002885 -
Lal9g0583 570 TIGRFAM PPR: pentatricopeptide repeat domain 487 519 IPR002885 -
Lal9g0583 570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 133 167 IPR002885 -
Lal9g0583 570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 448 482 IPR002885 -
Lal9g0583 570 Gene3D Tetratricopeptide repeat domain 391 566 IPR011990 GO:0005515
Lal9g0583 570 Gene3D Tetratricopeptide repeat domain 187 304 IPR011990 GO:0005515
Lal9g0583 570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 238 272 IPR002885 -
Lal9g0583 570 SUPERFAMILY HCP-like 173 344 - -
Lal9g0583 570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 273 307 IPR002885 -
Lal9g0583 570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 343 377 IPR002885 -
Lal9g0583 570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 168 202 IPR002885 -
Lal9g0583 570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 413 447 IPR002885 -
Lal9g0583 570 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 1 568 - -
Lal9g0583 570 Pfam PPR repeat family 417 461 IPR002885 -
Lal9g0583 570 Pfam PPR repeat family 345 385 IPR002885 -
Lal9g0583 570 Pfam PPR repeat family 237 285 IPR002885 -
Lal9g0583 570 Pfam PPR repeat family 482 530 IPR002885 -
Lal9g0583 570 Pfam PPR repeat family 168 213 IPR002885 -
Lal9g0583 570 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 483 517 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0583 Lal-Chr9 3928234 3929946 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0583 116 564 Glycosyltransferase AT1G05670 22.976 1.36e-38 149
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0583 9 3928234 3929946 Lal9g0583 9 3928234 3929946 ECH