Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0573 ATGGCTGCGGTTGCTGAGAACTCTGCTGATGCAGTAGCTCCTGTTTCTGCTAAATTGGACTCCAAACTAAAGCCTGATGAATCTGAATTCAATGTGCAAAATTTAGTTGACATGTTCAAAAAGCTGAATCCTTTGGCTAAGGAGTTTTTTCCTTCATCTTATCCTCAACATGATTCTGCTCATGAGAGCTATAATCAGTTCCTACCCAACAATTTTGTGGCCACCAATGACCTCTTAGTCAATGTTCATAACCCAAGACGGAGAAGTGCTAATTTTAATCATGGCCGTGGAGGGAGAAGGATGAGTGCTAGAATGCCTAATCCTCGGAGGGAAGACAGCGTTAGAAGAACAGTATATGTTTCTGACATTGATCAGAATGTAACTGAGGAGCAGCTTGCTGTAATGTTCAGCCCTTGTGGACAAGTAAGTGTGGCCTTGATTGGTATCTTGGTGATTGATTGCCGAATTTGCGGTGATCCTCATTCAGTACTTCGCTTTGCATTTGTTGAGTTCACTGATGGGCATGGTGCAAGGGCTGCTTTAAGCCTTAGTGGTACTATGCTTGGATTCTACCCAGTCAGGGTCCTTCCCTCAAAAACTGCTATCCTTCCTGTGAATCCTACATTCCTCCCTAGGTCAGCTGATGAGCGTGAAATGTGTACAAGGACTGTCTACTGCACAAACATTGATCGGAAGGTTTCTCAGGCTGAAGTGAAGCAGTTTTTTGAATCATTTTGTGGGGAGGTCACTCGCTTGAGGCTTTTAGGAGATCATCAGCATTTAACTCGAATCGCTTTTGTGGAGTTTGCGATGGCTGAGAGTGCCATTCTTGCACTGAGTTGCAGTGGGATGCTGTTGGGAACCCAGCCAGTCAGGGTTAGTCCTTCAAAGACTCCTGTGAGGCCTAGGGTCACCCGTCCTACAGGGCATAACTGA 936 0.4541 MAAVAENSADAVAPVSAKLDSKLKPDESEFNVQNLVDMFKKLNPLAKEFFPSSYPQHDSAHESYNQFLPNNFVATNDLLVNVHNPRRRSANFNHGRGGRRMSARMPNPRREDSVRRTVYVSDIDQNVTEEQLAVMFSPCGQVSVALIGILVIDCRICGDPHSVLRFAFVEFTDGHGARAALSLSGTMLGFYPVRVLPSKTAILPVNPTFLPRSADEREMCTRTVYCTNIDRKVSQAEVKQFFESFCGEVTRLRLLGDHQHLTRIAFVEFAMAESAILALSCSGMLLGTQPVRVSPSKTPVRPRVTRPTGHN 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0573 311 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 222 298 IPR000504 GO:0003723
Lal9g0573 311 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR 1 308 - -
Lal9g0573 311 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 224 290 IPR000504 GO:0003723
Lal9g0573 311 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 118 189 IPR000504 GO:0003723
Lal9g0573 311 Gene3D - 82 201 IPR012677 -
Lal9g0573 311 Gene3D - 210 304 IPR012677 -
Lal9g0573 311 MobiDBLite consensus disorder prediction 89 113 - -
Lal9g0573 311 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 116 200 IPR000504 GO:0003723
Lal9g0573 311 CDD RRM1_CID8_like 114 202 IPR034823 -
Lal9g0573 311 PANTHER POLYADENYLATE-BINDING PROTEIN-INTERACTING PROTEIN 9 1 308 - -
Lal9g0573 311 SUPERFAMILY RNA-binding domain, RBD 90 201 IPR035979 GO:0003676
Lal9g0573 311 SMART rrm1_1 223 294 IPR000504 GO:0003723
Lal9g0573 311 SMART rrm1_1 117 196 IPR000504 GO:0003723
Lal9g0573 311 Pfam Ataxin-2 C-terminal region 38 53 IPR009818 -
Lal9g0573 311 SUPERFAMILY RNA-binding domain, RBD 212 304 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0573 Lal-Chr9 3866455 3872297 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0573 107 279 Eukaryotic Initiation Factors Gene Family AT1G34140 25.568 3.73e-10 58.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0573 9 3866455 3872297 Lal9g0573 9 3866455 3872297 ECH