Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0565 ATGGTTCTCATCAATTCCACTCAAACCAAATATGTTTCTACAAAGCTCCCATTTTTTTTCAGAACCCACTTCACCAATTTACCCAACAAGCCACAACTTCCACTTCCACCACTCCATTCAAATACACACTCACAGCTACAAAACAATGGAGGGTTCTGCTTCCAACACTGTGTCCCCTTCTTGCAACACGTCAGGGATCACAAGGATATTAACTGTGGCAGAACCCTTCATTCTCTCTTTATCAAGAGTGCCTTAGACAAAGACGTCTTTGTACAGAACAACATGGTCAGGTTTTATGGTGATATTGGAGAACTCGAGAATGCACATAAATTGTTTGATGAAATTCCTGATCCGAGTTTGATTTGTTGGACCAGCATGGTCTCGTGCTATGTCCATGTGGGGCACCATGAAGTCGGTCTGAGGTTGTTTTGTAGACTTTGTCGATCCGGGGTGCACCCCAACGATTTTGGTTTCTCTGTCGCACTTAAGGCGTGCAGGGTGATGTGTGATCATCTCATGGGTAGGCTCATTCATGGGTTGATAGTCAAAACTGGATTTGGTTCACATGATTTTTGTGGTGCTTCGATTCTTCATATGTATGCTGAATGTGGAGATATTGAGAATGCGAGGAAGTTTTTTGATGAGGTTTGTGTGGGAGAAACATGTGAAGCATTGTGGAATACTTTGCTGAATGCATATGTGCAAATGTCTGATGTGGAGGGAGCTATGAAATTGTTTCGCGAGATGGGGCACTCTGTTGTGTCACCGAATCGGTTTACTTACACAATCCTTGCTAAACTCTGTGTTGATGTCTTGGATTTTGAACTTGGAAGGTCTGTTCATGGCCAGACTATTAAGATTGGGATTGAAAATGATGTTGTGGTGGGTGGGGCTCTTGTTGACTCTTATGCGAAACTGGGATTCTTAGAGGATGCTTGTAAAGTGTTTCATATTCTTGAAGAGAAGGATAATGTGGCATTATGTGCTTTATTGTCTGGGTTTAACCAAATTGAAGAGTCTAAGGAAGGACTTGAAATTTATATTGCTTTTCTTTCTGAAGGCAACATACCAGATCCATTTATTTGTGCAACTGTTGTTAGTTTGTGCTCAAATTTGGAGACAGTGCTTGCTGGTACCGAAGTTCACTGTGGTATAATCAAACTTGGCTTTAAGATGGATTCATATCTTGGTAGTGCCTTTATCAACATGTATGGAAGCTTTGGGATGACTTCTGATGCTTATAAATGTTTTCTTGAGGTTTGCAATAAGAATGAAATATGTATAAGTGCCATGATGAATAATTTAATTCTCAATTCAAATTATTTGAAAGCTTTAGAGCTGTTTTGTGGGATGAGGGAAGTTGTTGCACAAAGCAATAATGCAATCAGCTATGCTCTACGGGCTTGTGGAAACCTTTTTATGCTTAAAGAAGGGAGATCATTTCATTCTTTCATTATTAAAAATATTTTTGAAGATGACTCTAGGTTGGGATTAGATAATGCTCTTCTTGACATGTATATTAGATGTAGAGTTATTGATGATGCAAAATTAGTCTTCCAAAAGATGCAAACGCCAAATGAATTTTCCTGGAGCACCATCATATCTGGATGCAGTGAATCAGGGCAGTTTGTAGAGGCTCTGAGGATCTTTAAAGATATGCTTCGATCTTCAAAACCTAGTCAATTCACCTTAATTAGTGTTATTCAAGCTTGTGCAGAAATAGAGGCACTTGATGTTGGAAAACAAGTCCAGGCTTTTATCATGAAAGTTGGATTTGAATATTATCCATTTGTTGGAAGCGCCCTGATTAACATGTATGCAGTATTTAAAAACGAAACTTTGAATGCGTTCACGGTATTCTTGTCCATGAAAGAGCGAGATCTTATCTCTTGGAGTGTCATGTTAACTTCATGGGTCCAAAATGGTTATCATGAAGAAGCGCTCAAGCTTTTTGCAGAATTCCAAACTGTTCCTGTTTTTCAGGTTGACGAGTCTATCTTATCCAGCTGTATCTCAGCTGCTGCTGGCTTAGCAGCCCTGGACATAGGCAAATGTTTCCATTCTTGGGTTATCAAACTTGGCTTTGAAATTGATCTTCATGTGGCTTCTTCCATTACAGACATGTATAGCAAATGTGGAAATATTAAAGATGCCTGCAAGTATTTTAATGCTATCAGTGGCCATAATTTAGTGTCTTGGACAGCTATGATATATGGATATGCATATCATGGTCTTGGGAAAGAATCTATCGAACTGTTTAACAAGGCTACAGAATTTGGCCTGGAACCTGATGGTGTCACCTTCACTGGGGTTTTAGCTGCATGTAGTCATGCTGGACTTGTTAAGGAGGGTTGGGAACATTTTGAGTACATGCGAAGTAAATACAGCAGTGAAGTAACCATAAATCATTATGCATGCATGGTTGATCTTCTTGGTCGAGCAGCAAAATTGGAAGAAGCAGAGGTTTTGATAAAGGAAGCTCCATTTCATTCAAAATCTCTTCTCTGGAAGACTTTGCTAGGTGCTTGCTCTAAACATGAGAATGCTGAAATAGGAAACAGAATATCAAAGATGCTCACTGATATCGAACTAAGTGAACCCTCAACCTATGTTCTACTGTCTAACATTTATGCATCAGCGTCAATGTGGAAAAATTGCTTAGACTTGAGAAATAAAATGATAAAAGGGAGTGTTAGTAAACAACCTGGTAGTAGTTGGGTTCAGTTAGCATGA 2733 0.393 MVLINSTQTKYVSTKLPFFFRTHFTNLPNKPQLPLPPLHSNTHSQLQNNGGFCFQHCVPFLQHVRDHKDINCGRTLHSLFIKSALDKDVFVQNNMVRFYGDIGELENAHKLFDEIPDPSLICWTSMVSCYVHVGHHEVGLRLFCRLCRSGVHPNDFGFSVALKACRVMCDHLMGRLIHGLIVKTGFGSHDFCGASILHMYAECGDIENARKFFDEVCVGETCEALWNTLLNAYVQMSDVEGAMKLFREMGHSVVSPNRFTYTILAKLCVDVLDFELGRSVHGQTIKIGIENDVVVGGALVDSYAKLGFLEDACKVFHILEEKDNVALCALLSGFNQIEESKEGLEIYIAFLSEGNIPDPFICATVVSLCSNLETVLAGTEVHCGIIKLGFKMDSYLGSAFINMYGSFGMTSDAYKCFLEVCNKNEICISAMMNNLILNSNYLKALELFCGMREVVAQSNNAISYALRACGNLFMLKEGRSFHSFIIKNIFEDDSRLGLDNALLDMYIRCRVIDDAKLVFQKMQTPNEFSWSTIISGCSESGQFVEALRIFKDMLRSSKPSQFTLISVIQACAEIEALDVGKQVQAFIMKVGFEYYPFVGSALINMYAVFKNETLNAFTVFLSMKERDLISWSVMLTSWVQNGYHEEALKLFAEFQTVPVFQVDESILSSCISAAAGLAALDIGKCFHSWVIKLGFEIDLHVASSITDMYSKCGNIKDACKYFNAISGHNLVSWTAMIYGYAYHGLGKESIELFNKATEFGLEPDGVTFTGVLAACSHAGLVKEGWEHFEYMRSKYSSEVTINHYACMVDLLGRAAKLEEAEVLIKEAPFHSKSLLWKTLLGACSKHENAEIGNRISKMLTDIELSEPSTYVLLSNIYASASMWKNCLDLRNKMIKGSVSKQPGSSWVQLA 910
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0565 910 Gene3D Tetratricopeptide repeat domain 43 174 IPR011990 GO:0005515
Lal9g0565 910 Gene3D Tetratricopeptide repeat domain 380 477 IPR011990 GO:0005515
Lal9g0565 910 Gene3D Tetratricopeptide repeat domain 274 377 IPR011990 GO:0005515
Lal9g0565 910 Gene3D Tetratricopeptide repeat domain 175 273 IPR011990 GO:0005515
Lal9g0565 910 Gene3D Tetratricopeptide repeat domain 497 588 IPR011990 GO:0005515
Lal9g0565 910 TIGRFAM PPR: pentatricopeptide repeat domain 528 556 IPR002885 -
Lal9g0565 910 TIGRFAM PPR: pentatricopeptide repeat domain 121 154 IPR002885 -
Lal9g0565 910 TIGRFAM PPR: pentatricopeptide repeat domain 731 764 IPR002885 -
Lal9g0565 910 TIGRFAM PPR: pentatricopeptide repeat domain 225 257 IPR002885 -
Lal9g0565 910 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 526 560 IPR002885 -
Lal9g0565 910 Pfam PPR repeat family 225 268 IPR002885 -
Lal9g0565 910 Pfam PPR repeat family 525 572 IPR002885 -
Lal9g0565 910 PANTHER - 59 216 - -
Lal9g0565 910 PANTHER - 353 572 - -
Lal9g0565 910 PANTHER - 174 378 - -
Lal9g0565 910 PANTHER - 557 908 - -
Lal9g0565 910 Gene3D Tetratricopeptide repeat domain 660 909 IPR011990 GO:0005515
Lal9g0565 910 Pfam E motif 846 908 IPR046848 -
Lal9g0565 910 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 729 763 IPR002885 -
Lal9g0565 910 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 222 256 IPR002885 -
Lal9g0565 910 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 119 153 IPR002885 -
Lal9g0565 910 Pfam PPR repeat 731 760 IPR002885 -
Lal9g0565 910 Pfam PPR repeat 298 322 IPR002885 -
Lal9g0565 910 Pfam PPR repeat 629 653 IPR002885 -
Lal9g0565 910 Pfam PPR repeat 766 794 IPR002885 -
Lal9g0565 910 Pfam PPR repeat 122 151 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0565 Lal-Chr9 3823147 3825879 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0565 227 910 Glycoside Hydrolase AT3G49170 31.286 3.07e-112 363