Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0556 ATGTTGTTTTTGATGTCAAGTTTCAATTTTTTCTATGTTGTCATCTTGGGTTTTCTGGTTTTTAGTTCCTTTGAAGGGTTTGAATCCAATGCTCAACTCATACCAAAAGAAGAAGTGAAAGTTCTACAAGCAATATCAGATAAACTAGGGAGCTTGAATTGGAAAGTTACAGAACGTTCCTGCATGGAGAATGGAGGATTTAATGGCAAATTTAATATGAATGATGACATTGTAAGGAATGTCACATGTGATTGTACTTTCCATTCTAGCACCATTTGTCATGTTACCAACATCTTGCTCAAGGGTCAAAATATCTCTGGAGTTATGCCTGATGAATTTGGAAATCTCACTCAATTGCAAGTACTCGATCTCACTCACAATTATCTCAATGGCTCAATTCCTAAGAGTTTTGCACATACATCGCTCATCATTTTGTCCCTTTTGGGAAATCGAATTAGTGGTTCAATTCCCGCAGAAATCGGCGAGATTGCTAATCTGGAGGAACTGGTCTTAGAAAATAATCTACTTGGAGGACCACTTCCTCCCAGCCTTGGAAATTTGAGCAAGTTGAATAGATTACTTCTTTCTGCAAATAATTTCACAGGGACAATACCAGAAACATTTAGCAAACTGAAGAATCTCACCGATTTTAGGATAGGTGGAAACAGTTTATCTGGAAAGATACCCATTTTCATTAGGAACTGGACCAACCTTCACAGATTGGATCTGCAAGGAACATCTATGGAAGGCCCGATTCCTTCCACCATATCTGAGTTGAAATTTTTGACTGAATTGAGAATAACTGATTTGAATGGACCAACTATGACATTTCCTAATCTGAAGGATTTGACGAACTTTAGGCGACTGGAATTGAGAAATTGCTTGATCACTGGTCCAATTCCAGATTACATTGGGAAAATGACAAAATTAAAATCTTTAGACCTAAGCTTCAATATGTTGACTGGTTCAATCCCAAATTCAATTCATGGCTTGAAAGAGCTAGATTACCTGTTTCTGACTAACAATTCTCTGACAGGACCGATTCAAGACTGGATACTGGACTGGAAACATTATATGGATTTATCGTACAACAATTTTACAGAGTCTTCTGCAACTAGCTGCCAGATCTCGGATTTGAACTTAGCTTCAAGCCATTCTTCTTCAGCAATCACTTCAAATTTTTGTTTGAAGAAGAACCTACCTTGTCCAGGAAAACCCCAGTATTATTCATTGTTCATAAATTGTGGAGGACCTAAAGGGGAGTTTGAGGGAAATCACTACACAGACGATCTCCAACGAGATGGTATTTCAAACTTTGTTCTTAGAAATGATGATCAATGGGCTTATAGCAGCACAGGAGTATATCAGGGAAATAATGCTGCTAATTATGTAGCAACAAACAAATTTTCTTTGAATATTAGTGGGCCAGGATACTACCAAACGGCCCGCCTTTCCCCTCTATCACTGAAGTACTATGGCCTTTGTATGCGGAAGGGAAATTATAAAGTGAAGCTGCATTTTGCTGAGATAATGTTTTCTGATGACCAGACGTCTAGCAGTCTTGGAAGGCGCATATTTGATGTTTCAATTCAAAAAACAGAAGTTCTAAAGGTAGAACTTCGCAATGCTGCTTCTTGGCAGGGTTTTAAATATTTGAAAGATTTTAACATCATGGAAGCAATTGGTGGAGTTGGTAAGGGAATCACTAAGGAATTTGATGTGGATGTTAATGATAGTACCTTGGAAATCCACTTATACTGGGGAGGGAAAGGAACTACTGCTATTCCTGACAGAGGTGTATATGGACCTCTTATATCTGCTATCACGGTGACACCAAACTTTGAAATTAAATCAGAACGAGGGTTGTCTGCTGGAGCTATTGGTGGAATTGTGGCTGCATCATGTGTGTTTGTCATACTGATACTGGTTCTCCTCCGGAAGATGGGTTTCCTTGGTAGGAAAGATATAACAGACAAAGAACTCCTAGATCTGAAAACGGGTTATTTCAGCTTAAGACAAATTAAAGCAGCTACTAATAACTTTGACCAAGCAAATAAAATAGGTGAAGGAGGCTTTGGACCAGTATACAAGGGTGTACTGCCAGATGGTGATGTGATTGCTGTTAAGCAGCTCTCCTCCAAATCAAAGCAAGGGAACCGTGAATTTGTTAATGAAATCGGAATGATATCTGCTTTGCAGCATCCAAACCTTGTAAATCTTTACGGCTGCTGCATTGAAGGAAACCAGTTGCTGCTAATATATGAATACATGGAGAACAATTGTCTTGCGCGTGCACTCTTTGGTGAACAAGAACAGAAGCTGAACTTAGACTGGCGCACGAGAATGAAAATTTGTGTGGGGATAGCAAGGGGATTAGCTTATCTCCATGAAGAATCAAGGTTGAAAATAGTACACAGGGACATTAAGGCAACCAATGTCTTACTTGATAAGGATCTAAATGCCAAGATCTCCGACTTTGGTTTAGCCAAGCTTGATGAAGAAGAGAATACCCATATCAGCACACGGATAGCGGGAACAATTGGTTACATGGCTCCTGAATATGCTATGAGGGGTTACTTGACTGACAAGGCAGATGTTTATAGCTTCGGAATTGTAGCTTTAGAGATTGTTAGTGGAAAGAGCAACACGAATTACAGGCCAAAAGAAGAGTTTGTTTATCTTCTGGATTGGGCCTATGTTCTCCAAGAGCAAGGAAACCTTCTGGATTTGGTGGACTCAAGTCTCGGTTCAAGTTACTCTTCAGAGGAGGCAATGAGAATGCTGATCTTGTCTCTCTTATGTACCAATCCATCTCCAACTCTTAGACCATCCATGTCATCTGTAGTGAGCATGCTTGAAGGAAAAACTCCGATTCAAGCGTCGAAAGTCATGTTCAGTGAGAGTAGCGAGAGTAGCCAACATGCAAGGTTTAAAGCCTTGCAGTTGCTATCACAAGACAGTCAAACTCTTGTTTCTTCTCAATTCTCACAAGAAAGTGTGCATCAAAGAGACAAATCAACTTCTGGGCCATGGATTGACTCCTCCATTTCTCTTCCAAGTGTAGATAATTATTCTTCAACCAGCAAACTTTGA 3093 0.3964 MLFLMSSFNFFYVVILGFLVFSSFEGFESNAQLIPKEEVKVLQAISDKLGSLNWKVTERSCMENGGFNGKFNMNDDIVRNVTCDCTFHSSTICHVTNILLKGQNISGVMPDEFGNLTQLQVLDLTHNYLNGSIPKSFAHTSLIILSLLGNRISGSIPAEIGEIANLEELVLENNLLGGPLPPSLGNLSKLNRLLLSANNFTGTIPETFSKLKNLTDFRIGGNSLSGKIPIFIRNWTNLHRLDLQGTSMEGPIPSTISELKFLTELRITDLNGPTMTFPNLKDLTNFRRLELRNCLITGPIPDYIGKMTKLKSLDLSFNMLTGSIPNSIHGLKELDYLFLTNNSLTGPIQDWILDWKHYMDLSYNNFTESSATSCQISDLNLASSHSSSAITSNFCLKKNLPCPGKPQYYSLFINCGGPKGEFEGNHYTDDLQRDGISNFVLRNDDQWAYSSTGVYQGNNAANYVATNKFSLNISGPGYYQTARLSPLSLKYYGLCMRKGNYKVKLHFAEIMFSDDQTSSSLGRRIFDVSIQKTEVLKVELRNAASWQGFKYLKDFNIMEAIGGVGKGITKEFDVDVNDSTLEIHLYWGGKGTTAIPDRGVYGPLISAITVTPNFEIKSERGLSAGAIGGIVAASCVFVILILVLLRKMGFLGRKDITDKELLDLKTGYFSLRQIKAATNNFDQANKIGEGGFGPVYKGVLPDGDVIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVNLYGCCIEGNQLLLIYEYMENNCLARALFGEQEQKLNLDWRTRMKICVGIARGLAYLHEESRLKIVHRDIKATNVLLDKDLNAKISDFGLAKLDEEENTHISTRIAGTIGYMAPEYAMRGYLTDKADVYSFGIVALEIVSGKSNTNYRPKEEFVYLLDWAYVLQEQGNLLDLVDSSLGSSYSSEEAMRMLILSLLCTNPSPTLRPSMSSVVSMLEGKTPIQASKVMFSESSESSQHARFKALQLLSQDSQTLVSSQFSQESVHQRDKSTSGPWIDSSISLPSVDNYSSTSKL 1030
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0556 1030 MobiDBLite consensus disorder prediction 994 1030 - -
Lal9g0556 1030 Pfam Protein tyrosine and serine/threonine kinase 684 926 IPR001245 GO:0004672|GO:0006468
Lal9g0556 1030 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 73 1013 - -
Lal9g0556 1030 Pfam Leucine rich repeat 286 344 IPR001611 GO:0005515
Lal9g0556 1030 Pfam Leucine rich repeat 94 152 IPR001611 GO:0005515
Lal9g0556 1030 ProSitePatterns Serine/Threonine protein kinases active-site signature. 803 815 IPR008271 GO:0004672|GO:0006468
Lal9g0556 1030 Gene3D Ribonuclease Inhibitor 271 400 IPR032675 -
Lal9g0556 1030 Gene3D Transferase(Phosphotransferase) domain 1 757 975 - -
Lal9g0556 1030 SMART serkin_6 681 950 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal9g0556 1030 Gene3D Phosphorylase Kinase; domain 1 649 756 - -
Lal9g0556 1030 Pfam Malectin domain 550 608 IPR021720 -
Lal9g0556 1030 Pfam Malectin domain 410 537 IPR021720 -
Lal9g0556 1030 CDD STKc_IRAK 687 954 - -
Lal9g0556 1030 Gene3D - 407 613 - -
Lal9g0556 1030 SUPERFAMILY L domain-like 82 376 - -
Lal9g0556 1030 Gene3D Ribonuclease Inhibitor 53 205 IPR032675 -
Lal9g0556 1030 Gene3D Ribonuclease Inhibitor 206 270 IPR032675 -
Lal9g0556 1030 ProSiteProfiles Protein kinase domain profile. 681 959 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lal9g0556 1030 SUPERFAMILY Protein kinase-like (PK-like) 665 953 IPR011009 -
Lal9g0556 1030 PANTHER - 73 1013 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0556 Lal-Chr9 3769266 3781156 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0556 10 1022 Receptor kinase-like Gene Family AT1G53440 60.976 0.0 1234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Lal9g0556 PK_Tyr_Ser-Thr 1.5e-49 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0556 9 3769266 3781156 Lal9g0556 9 3769266 3781156 ECH
Lal2g0642 2 3829663 3840211 Lal9g0556 9 3769266 3781156 LSH