Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0537 ATGGCGAAAACAAAGCCACGTAGAAAAAACTTGGATTCCTACACCGTCCCAGGCACCAACAAGATCATAAAAGTTGGAGACAATGTTTTGCTGCGGCCTTTGGACACGACAACTCCACCGTACGTGGCGGTCGTGGATAAGATCCAAAAAGGTAAGAGGAACAATGTTAAGGTGCGTACGAGATGGTATTACAGGCCTGAAGATTCAATAGGGGGTAGAAGGCAATTCCATGGAGCAAAAGAGCTTTTTTTATCTGACCACTATGATGATCAGAGTCCTTACGCTATTGAAGGAAAATGTGTTGTTCATTCTTTCAAAAACTACACTAAGCTTGAGAATGTAGCTGCTGAGGATTACTATTGTAGATTTGAGTATAACTCTGCAACTGGGGCTTTCACCCCTGACCGTGTTGCTGTGTATTGCAAATGTGAGATGCCTTATAACCCGGATGATCTCATGGTGCAATGTGAGGAGTGCAAGGATTGGTACCATCCTATGTGCATGGGCATGACTATTGAAGAAGCAAAGAAACTAGAACTTTTTGTATGTCCCGAATGTTCATCTGGTGATGAGTTGAAGAAACCCCTAGCTAAATTATGTGCATTACCAGGAGCTGATGGCAAGGTGATGACCTGCACCGAGTGGAGCCTAAGCGGCGAAAGACAGGACCATGATGCAGAATTAACCATTGGAGTGGTGGCTCATGCTGAATTTGGCTGCCTATCTGGCAGTTGTAGTTGCTGTGGCATTGTACAGCTTCTTCTAGAGGCTATAAACATATATACTTATGTTTCCCTTTGTTTAGGAAGAGAAACTTTGGTCCAAATATTTATTCCTGAGATCGCATCAAACTTTGAATAA 861 0.4309 MAKTKPRRKNLDSYTVPGTNKIIKVGDNVLLRPLDTTTPPYVAVVDKIQKGKRNNVKVRTRWYYRPEDSIGGRRQFHGAKELFLSDHYDDQSPYAIEGKCVVHSFKNYTKLENVAAEDYYCRFEYNSATGAFTPDRVAVYCKCEMPYNPDDLMVQCEECKDWYHPMCMGMTIEEAKKLELFVCPECSSGDELKKPLAKLCALPGADGKVMTCTEWSLSGERQDHDAELTIGVVAHAEFGCLSGSCSCCGIVQLLLEAINIYTYVSLCLGRETLVQIFIPEIASNFE 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0537 286 PANTHER BNAC03G64850D PROTEIN 3 229 IPR045205 GO:0006325|GO:0035064
Lal9g0537 286 SMART BAH_4 21 136 IPR001025 GO:0003682
Lal9g0537 286 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 135 199 IPR013083 -
Lal9g0537 286 SUPERFAMILY FYVE/PHD zinc finger 131 193 IPR011011 -
Lal9g0537 286 ProSitePatterns Zinc finger PHD-type signature. 141 186 IPR019786 -
Lal9g0537 286 ProSiteProfiles Zinc finger PHD-type profile. 138 189 IPR019787 -
Lal9g0537 286 PANTHER OS08G0421900 PROTEIN 3 229 - -
Lal9g0537 286 ProSiteProfiles BAH domain profile. 21 136 IPR001025 GO:0003682
Lal9g0537 286 SMART PHD_3 140 187 IPR001965 -
Lal9g0537 286 Pfam PHD-finger 140 188 IPR019787 -
Lal9g0537 286 Gene3D - 2 134 IPR043151 -
Lal9g0537 286 Pfam BAH domain 23 135 IPR001025 GO:0003682
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0537 Lal-Chr9 3608264 3611804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0537 41 138 Core DNA Replication Machinery Family AT4G14700 29.293 5.58e-08 52.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lal9g0537 BAH 1e-19 No_clan