Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0256 ATGGATATGAATCATCCTTTTAATGGACAAAGCCAGCAAATGTCAAACCAGTCACTGGAAAACATTATAGGTTGTTCAAAAGCACAACAAGACAAGAAACCAAAACCTCAGCCAGAACAAGCTCTAAAGTGCCCAAGATGTGACTCCACCAACACCAAATTCTGTTACTACAACAACTACAGCCTTTCTCAGCCAAGGTATTTCTGCAAGTCTTGCAGGAGATATTGGACAAAAGGAGGAACTTTGAGGAATGTTCCAGTGGGTGGAGGATGCAGGAAGAACAAGAGATCATCAACAAAGAGGGTTCAAGATCAAACATTTACACCTAACCCAAACCCACTCATTGGCCTCACACCAATATCTTATGACTTTAATGACCTAAACCTTGCATTAGCTAGGCTCCAAAAGGGTGCAATGGGTTATGATGACCATGATCTTTCAATCATGGGGAACAACACAAACCCAAGTACCCTATGTGATAACATTCTTGGAAATTTGGGTACCAACCCTTCAAACCCTGGTTTCTTAGATGCACTTAGAAGTGGGTTCCTTGGTTCTCACAACAACAACAATAATAGTATGAAAAATCTGTACTTTGGATATGGGAATGGTGAGAATATGGGTGAGGTGGACAATGGAAACGATGGTTGTAGAGGGATGATGTTATCTTATGATCATCAACAACAAATGAATATTGCAACTACTCAAGCAGTTTCTATGACTACTATGAAGCAAGAACTGTGTAATGCAAGGGAACAAAGTGAAAGTAAGGTGCTTTGGGGTTTCCCATGGCAGCTCAATGGAGGAGGAGGAGACACAAACATGGCTGAAACAATTGACTCAGGTAGAGCAAATTGGAACAATGGGTTCAATTCATCATGGCATGGACTTCTCAATAGTCCTCTAATGTAG 912 0.4101 MDMNHPFNGQSQQMSNQSLENIIGCSKAQQDKKPKPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSTKRVQDQTFTPNPNPLIGLTPISYDFNDLNLALARLQKGAMGYDDHDLSIMGNNTNPSTLCDNILGNLGTNPSNPGFLDALRSGFLGSHNNNNNSMKNLYFGYGNGENMGEVDNGNDGCRGMMLSYDHQQQMNIATTQAVSMTTMKQELCNAREQSESKVLWGFPWQLNGGGGDTNMAETIDSGRANWNNGFNSSWHGLLNSPLM 303
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0256 303 ProSitePatterns Zinc finger Dof-type signature. 44 80 IPR003851 GO:0003677|GO:0006355
Lal9g0256 303 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 10 302 IPR045174 GO:0003700|GO:0006355
Lal9g0256 303 MobiDBLite consensus disorder prediction 88 110 - -
Lal9g0256 303 Pfam Dof domain, zinc finger 40 96 IPR003851 GO:0003677|GO:0006355
Lal9g0256 303 ProSiteProfiles Zinc finger Dof-type profile. 42 96 IPR003851 GO:0003677|GO:0006355
Lal9g0256 303 PANTHER DOF ZINC FINGER PROTEIN DOF3.2-LIKE 10 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0256 Lal-Chr9 1598390 1600856 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0256 12 303 C2C2-Dof Transcription Factor Family AT2G28510 38.671 1.62e-51 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal9g0256 zf-Dof 6.2e-34 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0256 - - lang:109353359 561.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0256 9 1598390 1600856 Lal9g0256 9 1598390 1600856 ECH
Lal1g0363 1 2195827 2197520 Lal9g0256 9 1598390 1600856 LSH
Lal10g1244 10 18710020 18711582 Lal9g0256 9 1598390 1600856 PCT
Lal9g0256 9 1598390 1600856 Lal10g1244 10 18710020 18711582 PCT