Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lal9g0229 ATGGTTTTCTCTTCTATTCCACTCTATGTAGATCCTCCCAATTGGCACCAGCAACCAAACCAGAACCATCATCAAGCAAATGGAAATGGCAGCCCTCAGATGCTTCCACCATTGCCCCCACAGGCATCTCTTACCGGAGGTGGAGGTGGAAGTGCTACTGTGGGGTCAATGAGGCCGGGCTCGATGTCAGATCGAGCCCGTCTAGCTAAGTTGCCTCCTCCTGATACCGCTCTAAAGTGTCCTCGTTGTGACTCCACCAACACTAAATTCTGCTACTTCAACAACTACAGCCTCTCGCAACCACGCCACTTCTGCAAGACTTGTAGGCGTTACTGGACTAGAGGGGGTGCTCTTAGAAACGTTCCTGTGGGTGGAGGATGCCGTAGGAACAAGAAGAACAAAAGGAGTCGCTCTAAATCTCCATCATCATCTGAGAAACAAACCCTTTCTAGTTCCACTACTAGTGCAATCCCTTCAGGTGGTACCACTCATGAGCTTATTGGTCAGATGACTCAACCACCTAACCTTCCTTTCATGGCCTCTCTACAGAACCAGATGAACCGTTATGGTGTTGCAAACATGGCTGGTCTGAACTTGCGTGAGATTCAAGGACAAACTGATCACATGGGGTTTCAAATTGGTTGTGGTAGTAGTTCAGGTGCTGGCGGCGGCAGTGGTGGTGGATTGGAGCAGTGGCGATCACAGCAGTTTCCTTTCTTGAACGGTTTTGAGTCAAATTCAGTTACTTCATACCCTTTTCAAAATGAGAGTGTTGAAGCAAATTCTGGGTTTGTTGGAGATATAGCTGCAAGCTCTAGGGTTTATAATCAGCAGCCACCAGTTAAAATGGAAGAGAATAGAGCTCTCAATTTGTTAAGATCATCTATGAGTAATACTGTCTCAGAAAATAACCAATACTATTCATGGACTGGTTTATCAGGTGTTCCTTCTTCTTCTACCACTAGTCATCTCTTGTGA 978 0.4632 MVFSSIPLYVDPPNWHQQPNQNHHQANGNGSPQMLPPLPPQASLTGGGGGSATVGSMRPGSMSDRARLAKLPPPDTALKCPRCDSTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKRSRSKSPSSSEKQTLSSSTTSAIPSGGTTHELIGQMTQPPNLPFMASLQNQMNRYGVANMAGLNLREIQGQTDHMGFQIGCGSSSGAGGGSGGGLEQWRSQQFPFLNGFESNSVTSYPFQNESVEANSGFVGDIAASSRVYNQQPPVKMEENRALNLLRSSMSNTVSENNQYYSWTGLSGVPSSSTTSHLL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lal9g0229 325 MobiDBLite consensus disorder prediction 123 174 - -
Lal9g0229 325 Pfam Dof domain, zinc finger 76 132 IPR003851 GO:0003677|GO:0006355
Lal9g0229 325 MobiDBLite consensus disorder prediction 142 174 - -
Lal9g0229 325 PANTHER DOF DOMAIN ZINC FINGER PROTEIN 5 320 - -
Lal9g0229 325 MobiDBLite consensus disorder prediction 14 32 - -
Lal9g0229 325 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 5 320 IPR045174 GO:0003700|GO:0006355
Lal9g0229 325 ProSitePatterns Zinc finger Dof-type signature. 80 116 IPR003851 GO:0003677|GO:0006355
Lal9g0229 325 MobiDBLite consensus disorder prediction 12 79 - -
Lal9g0229 325 ProSiteProfiles Zinc finger Dof-type profile. 78 132 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lal9g0229 Lal-Chr9 1401218 1404437 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lal9g0229 1 237 C2C2-Dof Transcription Factor Family AT2G37590 41.573 2.62e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lal9g0229 zf-Dof 1.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lal9g0229 - - gmx:100816635 386.726
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lal9g0229 9 1401218 1404437 Lal9g0229 9 1401218 1404437 ECH
Lal2g0234 2 1368235 1369921 Lal9g0229 9 1401218 1404437 LSH
Lal25g0148 25 937322 938967 Lal9g0229 9 1401218 1404437 PCT
Lal10g1261 10 18816409 18818922 Lal9g0229 9 1401218 1404437 PCT
Lal9g0229 9 1401218 1404437 Lal25g0148 25 937322 938967 PCT
Lal9g0229 9 1401218 1404437 Lal10g1261 10 18816409 18818922 PCT